PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040207-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 340aa    MW: 37989.6 Da    PI: 7.5944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040207-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07112132526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+r G C+ Gd+C +aHg
  AUR62040207-RA 112 ACPEFRR-GSCRKGDSCEYAHG 132
                     7******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MMMIHRQHPT VDIPQWDPPY EDPTTPIFSP QTNDYFAALK RYLPSSEFDD SDTESTDLPF  60
DSFTCDNFRM YEFKVRKCVR GRSHDWTECP YAHPGEKARR RDPRKYHYSG TACPEFRRGS  120
CRKGDSCEYA HGVFECWLHP ARYRTQPCKD GPHCKRRVCF FAHSPEQLRV LPSLSESPRR  180
IGGGDTCKGF VGYSPTSVFE SFPESPPLSP SVSELASAMR GLQLGKLGMG LNPSPNPNPR  240
NVWGVQMGCS SPRSPRGFMG SGLCGGSSGP TTPNRSGLGL FDPFDVGFEE EVPMERVESG  300
RDLRAKIYAK LSKENSLDCD RVNSVSSGPD FGWVSDLIK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-95C3H family protein