PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62040207-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 340aa MW: 37989.6 Da PI: 7.5944 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 112 | 132 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C+ Gd+C +aHg AUR62040207-RA 112 ACPEFRR-GSCRKGDSCEYAHG 132 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence |
MMMIHRQHPT VDIPQWDPPY EDPTTPIFSP QTNDYFAALK RYLPSSEFDD SDTESTDLPF 60 DSFTCDNFRM YEFKVRKCVR GRSHDWTECP YAHPGEKARR RDPRKYHYSG TACPEFRRGS 120 CRKGDSCEYA HGVFECWLHP ARYRTQPCKD GPHCKRRVCF FAHSPEQLRV LPSLSESPRR 180 IGGGDTCKGF VGYSPTSVFE SFPESPPLSP SVSELASAMR GLQLGKLGMG LNPSPNPNPR 240 NVWGVQMGCS SPRSPRGFMG SGLCGGSSGP TTPNRSGLGL FDPFDVGFEE EVPMERVESG 300 RDLRAKIYAK LSKENSLDCD RVNSVSSGPD FGWVSDLIK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 5e-95 | C3H family protein |