PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039984-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 362aa MW: 39860 Da PI: 5.8589

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039984-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2.1e-06	27	57	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C++++ + l+C++++ +lC C ++H AUR62039984-RA 27 KPCDNCNVANSLLYCNTDSAFLCGPCDAKIH 57 57***999*****************99 PP
2	zf-B_box	30.4	8e-10	68	112	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ ++++++ fC+ ++ lC +C +H+ H++v AUR62039984-RA 68 IWVCEVCDSQPAVVFCKADGANLCSSCDHDIHSAnplarrHERVA 112 589*****************************6688888898875 PP
3	CCT	65.4	1.7e-22	323	362	1	40
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrF 40 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpRvKGrF AUR62039984-RA 323 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRF 362 9**************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MAATPSTDDN NSIKGLLTGW GLTLTGKPCD NCNVANSLLY CNTDSAFLCG PCDAKIHPPT 60 RYPRHERIWV CEVCDSQPAV VFCKADGANL CSSCDHDIHS ANPLARRHER VAVIPFLDSP 120 IDAVAAPSSA FLVPDNLDAT VIPSRDIIVG NSNDNTAVTN DSSSDDADAW LIPNPNNSFL 180 YSESDILNYN FSCSKFQFQP QNDAKPQIIV DDDTRNYAFA DSVVPSQSQG NNNNFAINNN 240 SINYVNSDSL FDNCFNIDFT QPNKHHKKNH NNDSQLLSPS FNYSVSSSDI GVVPDGSATS 300 MSSEVSYGFA KSTAADGGPL MDREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRVKG 360 RF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MAATPSTDDN NSIKGLLTGW GLTLTGKPCD NCNVANSLLY CNTDSAFLCG PCDAKIHPPT  60
RYPRHERIWV CEVCDSQPAV VFCKADGANL CSSCDHDIHS ANPLARRHER VAVIPFLDSP  120
IDAVAAPSSA FLVPDNLDAT VIPSRDIIVG NSNDNTAVTN DSSSDDADAW LIPNPNNSFL  180
YSESDILNYN FSCSKFQFQP QNDAKPQIIV DDDTRNYAFA DSVVPSQSQG NNNNFAINNN  240
SINYVNSDSL FDNCFNIDFT QPNKHHKKNH NNDSQLLSPS FNYSVSSSDI GVVPDGSATS  300
MSSEVSYGFA KSTAADGGPL MDREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRVKG  360
RF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-63	CO-like family protein