PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62039956-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 731aa    MW: 80472.3 Da    PI: 5.9392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62039956-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS170.71.1e-523945932203
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L+++A+ + +g+++laq++Larl+++ s  ++p+ R+a y++eAL+  l++   + ++a ++++ ++++++++++a+k+fsevsPi +f ++
  AUR62039956-RA 394 KDQLFKAADLILTGNFSLAQEILARLNHQLSLPAKPLVRAALYVKEALQMLLTG---NPVAAPSSKTLTPYDVVHKMNAYKMFSEVSPITQFMNF 485
                     689**************************************************9...555567888888999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledl 189
                     t+ qaIlea++ ++++HiiDfdi+ G+QW++++q+L  R++gppsl+iT++++ +s++  el  ++e+L +fA+ +g+ fe +v+  +  + ++ 
  AUR62039956-RA 486 TCTQAILEALDDADAIHIIDFDIGCGAQWASFIQELPLRKRGPPSLKITALAP-SSSHPFELALIRENLVQFANDIGIAFELQVVNLDlfDASSC 579
                     ****************************************************9.667999************************96664455566 PP

            GRAS 190 eleeLrvkpgEala 203
                     +l ++r++++Ea+a
  AUR62039956-RA 580 SLPNFRTSEDEAIA 593
                     77788888899987 PP
2GRAS93.33.8e-29596729236374
            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                     Pk+vv  ++  d+ + sF ++++++l+ ++ +++sl+     +++  +kvE+++++++i++ v  +         +l +W++ + +aGF+pv++s
  AUR62039956-RA 596 PKIVVSLDRGFDRCDVSFPQHLVHTLDSCTNFLESLDGL-NVATDIVNKVEKFFIQPRIESTVLGRVHV----PDKLPHWKNLFASAGFSPVQFS 685
                     9***********************************665.45778999***************987666....99******************** PP

            GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++qa++++++++++g++ve++++slvl W++r+Lv++SaWr
  AUR62039956-RA 686 NFTETQADYVVKRTPGRGFHVEKRQASLVLSWQRRELVAASAWR 729
                     *******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MMRAMPYNLQ GKGVVEVSGL ISQISSSVTP TWKTLDNLQH HQQLSQGDEE DDEDEFLQNP  60
AKKQISASSI ESEPTSTLDT TRRSPSPPTS TSTLSSSFTN CKNNYSTTAG VADPACARKE  120
DWPSHHHHQQ GSDNDNVTAA SSAXXXXXXX XXGLEDWDAL FPTGEGALLP WIIGDAEDPS  180
LGLKHLLQSG TLVDYEGNAG LGVVDQAFLG GSESYGNANG NAKIALISPN SSSGYLDAKN  240
GGINPSNAML LGSINNSNNY PHQFEVGDEK PQIFNPQLVM NQHQAQSLGN PSFFMPPLGY  300
CHLDQHLFQP PNKRHNPGVV LDPNLAVKNP FHDQGHDLML RKQQQAGVGF QQFPMGLPPP  360
MMVPKQNHHQ QQQQNHFPLP VLHQQQQLQE QDIKDQLFKA ADLILTGNFS LAQEILARLN  420
HQLSLPAKPL VRAALYVKEA LQMLLTGNPV AAPSSKTLTP YDVVHKMNAY KMFSEVSPIT  480
QFMNFTCTQA ILEALDDADA IHIIDFDIGC GAQWASFIQE LPLRKRGPPS LKITALAPSS  540
SHPFELALIR ENLVQFANDI GIAFELQVVN LDLFDASSCS LPNFRTSEDE AIARAPKIVV  600
SLDRGFDRCD VSFPQHLVHT LDSCTNFLES LDGLNVATDI VNKVEKFFIQ PRIESTVLGR  660
VHVPDKLPHW KNLFASAGFS PVQFSNFTET QADYVVKRTP GRGFHVEKRQ ASLVLSWQRR  720
ELVAASAWRC *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-81GRAS family protein