PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039824-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 460aa MW: 52921.3 Da PI: 7.1341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039824-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	6.8e-17	62	150	2	88
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 Yn+YA + GF +rk++ +++ +++++ +r +vCs g+++e+k+ ++++ ++ + rtgCka+++ +k +g ++v + HnH+ AUR62039824-RA 62 LYNSYAFKHGFGIRKDRLNRRdDKDRTPRQRFLVCSFAGFKQEKKHGEQSKVYQKRNFRTGCKAHIQFDIDKvSGLYVVVNHTMVHNHS 150 7*************99888456666677778**********999999**************99*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MVYQSEFRHD SNARFVDDAN DYDINDEGEV EGIVNLNEGF TEATESELFD RKVKSDEEAY 60 DLYNSYAFKH GFGIRKDRLN RRDDKDRTPR QRFLVCSFAG FKQEKKHGEQ SKVYQKRNFR 120 TGCKAHIQFD IDKVSGLYVV VNHTMVHNHS RVPVSKRHLI RSHRKVTNEQ VVMMSSLTES 180 SIPVADAVRV LKHQAGGEAN LSFLCRDAYG ALSQHKKMMF DGCDAKRLLS YFKERKSSEY 240 DFFYDFDVDE KGHLQSFFFR DNRMKVDYDA FDRAQNDLSA QAVIEEVIEE CTARINLLMG 300 EDKDVPPELS KTNEQDVTQE KGDGSLLEPA VIFEELAEEH GGLEKEHGGF EREHGGIVKE 360 HTVQVDVKDP IKKRKKGQKN TRWKSTQEKV SNKLKGQKIK SWRKKSAKGV SKMKQKAQTT 420 IKDFLPVPDG NRLAHSNEFG GSLEFFEPDD YFGVNIREL*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MVYQSEFRHD SNARFVDDAN DYDINDEGEV EGIVNLNEGF TEATESELFD RKVKSDEEAY  60
DLYNSYAFKH GFGIRKDRLN RRDDKDRTPR QRFLVCSFAG FKQEKKHGEQ SKVYQKRNFR  120
TGCKAHIQFD IDKVSGLYVV VNHTMVHNHS RVPVSKRHLI RSHRKVTNEQ VVMMSSLTES  180
SIPVADAVRV LKHQAGGEAN LSFLCRDAYG ALSQHKKMMF DGCDAKRLLS YFKERKSSEY  240
DFFYDFDVDE KGHLQSFFFR DNRMKVDYDA FDRAQNDLSA QAVIEEVIEE CTARINLLMG  300
EDKDVPPELS KTNEQDVTQE KGDGSLLEPA VIFEELAEEH GGLEKEHGGF EREHGGIVKE  360
HTVQVDVKDP IKKRKKGQKN TRWKSTQEKV SNKLKGQKIK SWRKKSAKGV SKMKQKAQTT  420
IKDFLPVPDG NRLAHSNEFG GSLEFFEPDD YFGVNIREL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	KKRKK
2	372	400	KKRKKGQKNTRWKSTQEKVSNKLKGQKIK
3	372	408	KKRKKGQKNTRWKSTQEKVSNKLKGQKIKSWRKKSAK
4	373	401	KKRKKGQKNTRWKSTQEKVSNKLKGQKIK
5	373	409	KKRKKGQKNTRWKSTQEKVSNKLKGQKIKSWRKKSAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-11	FAR1 family protein