PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039662-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 546aa MW: 60397.8 Da PI: 6.7214

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039662-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.6	1.6e-42	171	246	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ak+yh+rhkvC+vhsk+p+v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q AUR62039662-RA 171 CQVYGCHKDLSSAKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 246 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MESWWFDSLD KGFESNEAIS QSDSIIKGKN VLIGWEHKSP LSNEDSVLTP SQRSVENRSF 60 SELGIAEVVR RQCPTDSTRN ELEDNGSDGD IYSSYVTTNA ISGDDESSSK FSSSVMDSSS 120 RESPLIDLKL GGFGDNPNSS STRTATAHVL SSADSSTPPK RVRVISQAVH CQVYGCHKDL 180 SSAKDYHKRH KVCDVHSKTP KVIVNGIEQR FCQQCSRFHL LGEFDDGKRS CRKRLAGHNE 240 RRRKPQVGFS NRNGRSFQSY TGSNFQGFTP TSTSFICQDI LPRGISHTVK YGTNDWVKHI 300 KVEDGTGCTQ TPTYSCINRQ LQPKSILPPY DFEKQFPFID NTNNTGTQFP FGKNVNQHTP 360 EIVSHSLFQT NSPRNEDLAL LDAASTVQEL AGISESGCAL SLLSFQSQNS SGHSSAMPGC 420 HPVVIPSSSP QYSVNEVSEK IFGNGAQALT SEVQNRYSSV IVSSTERNQP SFMSMLNYGN 480 NAHSEFGNEI HHRSKFMNIK DHLLCEDGTT IDLLQLSSQL QRVENQKLSE PLKQDTENSF 540 CLGMI*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MESWWFDSLD KGFESNEAIS QSDSIIKGKN VLIGWEHKSP LSNEDSVLTP SQRSVENRSF  60
SELGIAEVVR RQCPTDSTRN ELEDNGSDGD IYSSYVTTNA ISGDDESSSK FSSSVMDSSS  120
RESPLIDLKL GGFGDNPNSS STRTATAHVL SSADSSTPPK RVRVISQAVH CQVYGCHKDL  180
SSAKDYHKRH KVCDVHSKTP KVIVNGIEQR FCQQCSRFHL LGEFDDGKRS CRKRLAGHNE  240
RRRKPQVGFS NRNGRSFQSY TGSNFQGFTP TSTSFICQDI LPRGISHTVK YGTNDWVKHI  300
KVEDGTGCTQ TPTYSCINRQ LQPKSILPPY DFEKQFPFID NTNNTGTQFP FGKNVNQHTP  360
EIVSHSLFQT NSPRNEDLAL LDAASTVQEL AGISESGCAL SLLSFQSQNS SGHSSAMPGC  420
HPVVIPSSSP QYSVNEVSEK IFGNGAQALT SEVQNRYSSV IVSSTERNQP SFMSMLNYGN  480
NAHSEFGNEI HHRSKFMNIK DHLLCEDGTT IDLLQLSSQL QRVENQKLSE PLKQDTENSF  540
CLGMI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-44	SBP family protein