PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039645-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1340aa MW: 150907 Da PI: 7.9486

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039645-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	59	82	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lCr+ +r G C +G+ C+F H++ AUR62039645-RA 59 MPLCRDNLR-GNCTRGAFCRFLHSE 82 589999999.*************95 PP
2	zf-CCCH	18.8	2.8e-06	211	233	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+r G C +G++Ck+ H+ AUR62039645-RA 211 RSPCQHFLR-GKCDFGASCKRWHP 233 689****.********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1340 aa Download sequence
MEQTVSERPL YQEQHISQLH TQPNGTVSSN GAHLERDPEE RWCPRRISGD QLRHDKVQMP 60 LCRDNLRGNC TRGAFCRFLH SESDEHDRSR FCQNEPEKLG DVSTVGNSQL YRTNEEAGST 120 AKFSSRGRRS PCRRFQSGRC YRGVSCPYLH PEMPSFHNSR VEQQQVDRAV RDPGFDGRNR 180 DNFGRISLEH VEANKENNST IMSFSRECRS RSPCQHFLRG KCDFGASCKR WHPVNTYASS 240 RHDLNTQHQG ITETFNYPGS GERSRDVTLR TSQEHDRENM HNLLRTGAFS RESREKSPCR 300 NYLRGRCYRG SSCLHLHPVT VYDRPRSDSW SAEQRQVVSG TSRSPHFVDG SIATNFRISQ 360 SHDHNNYVNQ PCRDTHAFCE QNKAWLTKDG VQLAGSREEM DVNARSSSYE RQRNRLAGNF 420 GCDKPIREVC LQFTKGRCTR GELCRYLHGF HEYATSTYNW NEKPNAEAAR DSGYFGVANQ 480 YANTTTAQDP AGFKNYQSSL GESSLKASDG WFDMRRVDGL SCEVSGEKNR SFCNSAKGHE 540 NVSLWSRPFK RQRSRSRSPI NLQDDFHSRK FSRCDSRIDL YGGRSRNVAQ FQYPDRRSYR 600 YEKPVYHVNG QQRTCEETSV NPRSCEHYDS KLITPQMHEK VVTQGLQLEQ HANGGVGSNT 660 VIVGMKNEAD TVKCALQPSH TNQNEEILAA DSVAVDSSEG AAATPASSQD ALELGSTYSG 720 GKHLISPSAS DRTILVHEAN AEAPIDSGQE GKDETVELTP SIKTYCRKKS KKRQPISCEE 780 PTREEVIDAS KQGVEFCSVV DTSLSKPNIV NVSSIPVDME MSATRNNGLE NVLMHDHPVK 840 KKFRIRRKKK GPDASCEETR KGEVCNDLKL DTPVCSLEKT SLSNPDIVSV SDIPADVKMS 900 ASNNNDLQNV LMDEDPGIQI SSLLDTSLSD ANTLSLSGVP VEMETSASKN NDLEDVLMRD 960 QPVQKKVKKK RKKKRPAASC EETMEVEVTD VSKLGTPICS VVETSISNPN IVSVSEPLEG 1020 DVADSSTQVM PISSLVETSL SIPNIMSGSG VPVDKISASK NNHLENVPMC DNPVKQQALP 1080 LSLKGVVPNS RRKLLVLDVN GILVDIVVGY SHRYKPDTRV ATKAVFKRPF CDEFLQFCFD 1140 RFDVGIWSSR TRQNLKKVVD FLLEDSKDRL RFCWDQSHCT ATEYKTLENR EKPLVLKELK 1200 YLWWDTKGSR LPWDAGYYNE TNTVLLDDSP YKALRNPVTS DTVLILFTFF GTSVVQPNTA 1260 IFPRPYSYKN AGDHSLGPGG DLRNYLERLA EAENVQKFIQ ENPFGQRPIS IASRSWNFYS 1320 KIVGNYGRQE EYSNIAPVS*

Sequence ? help Back to Top

Protein Sequence Length: 1340 aa Download sequence

MEQTVSERPL YQEQHISQLH TQPNGTVSSN GAHLERDPEE RWCPRRISGD QLRHDKVQMP  60
LCRDNLRGNC TRGAFCRFLH SESDEHDRSR FCQNEPEKLG DVSTVGNSQL YRTNEEAGST  120
AKFSSRGRRS PCRRFQSGRC YRGVSCPYLH PEMPSFHNSR VEQQQVDRAV RDPGFDGRNR  180
DNFGRISLEH VEANKENNST IMSFSRECRS RSPCQHFLRG KCDFGASCKR WHPVNTYASS  240
RHDLNTQHQG ITETFNYPGS GERSRDVTLR TSQEHDRENM HNLLRTGAFS RESREKSPCR  300
NYLRGRCYRG SSCLHLHPVT VYDRPRSDSW SAEQRQVVSG TSRSPHFVDG SIATNFRISQ  360
SHDHNNYVNQ PCRDTHAFCE QNKAWLTKDG VQLAGSREEM DVNARSSSYE RQRNRLAGNF  420
GCDKPIREVC LQFTKGRCTR GELCRYLHGF HEYATSTYNW NEKPNAEAAR DSGYFGVANQ  480
YANTTTAQDP AGFKNYQSSL GESSLKASDG WFDMRRVDGL SCEVSGEKNR SFCNSAKGHE  540
NVSLWSRPFK RQRSRSRSPI NLQDDFHSRK FSRCDSRIDL YGGRSRNVAQ FQYPDRRSYR  600
YEKPVYHVNG QQRTCEETSV NPRSCEHYDS KLITPQMHEK VVTQGLQLEQ HANGGVGSNT  660
VIVGMKNEAD TVKCALQPSH TNQNEEILAA DSVAVDSSEG AAATPASSQD ALELGSTYSG  720
GKHLISPSAS DRTILVHEAN AEAPIDSGQE GKDETVELTP SIKTYCRKKS KKRQPISCEE  780
PTREEVIDAS KQGVEFCSVV DTSLSKPNIV NVSSIPVDME MSATRNNGLE NVLMHDHPVK  840
KKFRIRRKKK GPDASCEETR KGEVCNDLKL DTPVCSLEKT SLSNPDIVSV SDIPADVKMS  900
ASNNNDLQNV LMDEDPGIQI SSLLDTSLSD ANTLSLSGVP VEMETSASKN NDLEDVLMRD  960
QPVQKKVKKK RKKKRPAASC EETMEVEVTD VSKLGTPICS VVETSISNPN IVSVSEPLEG  1020
DVADSSTQVM PISSLVETSL SIPNIMSGSG VPVDKISASK NNHLENVPMC DNPVKQQALP  1080
LSLKGVVPNS RRKLLVLDVN GILVDIVVGY SHRYKPDTRV ATKAVFKRPF CDEFLQFCFD  1140
RFDVGIWSSR TRQNLKKVVD FLLEDSKDRL RFCWDQSHCT ATEYKTLENR EKPLVLKELK  1200
YLWWDTKGSR LPWDAGYYNE TNTVLLDDSP YKALRNPVTS DTVLILFTFF GTSVVQPNTA  1260
IFPRPYSYKN AGDHSLGPGG DLRNYLERLA EAENVQKFIQ ENPFGQRPIS IASRSWNFYS  1320
KIVGNYGRQE EYSNIAPVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	550	555	KRQRSR
2	964	972	QKKVKKKRK
3	965	973	KKVKKKRKK
4	968	974	KKKRKKK
5	969	975	KKKRKKK
6	969	973	KKRKK