PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62038713-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20369.3 Da PI: 4.8501 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.2 | 7.3e-16 | 11 | 79 | 28 | 96 |
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +++ +v k+FG+s + ll+++p+ r+++++sl+yeA+ r+ +Pv+G+vg++++++ +l++++++++ AUR62038713-RA 11 NATVFVSKFFGRSSLFYLLESAPRALRPAVFRSLLYEACGRTINPVSGVVGLLFTGNCNLCESAVDIVF 79 67899*********************************************************9998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MNIYNIIHSY NATVFVSKFF GRSSLFYLLE SAPRALRPAV FRSLLYEACG RTINPVSGVV 60 GLLFTGNCNL CESAVDIVFK GGVLKPIPEF IAGFLPETSN NSGEISELEL NLSNKKRGFS 120 DVEGGLSLDL DLRLTTTTPG VVSPWMDRVK RKKSRCFELE VSGTTSCESG SSAEVEEVDV 180 VDLSLSL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-35 | LBD family protein |