PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038228-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 446aa MW: 48520.7 Da PI: 5.0356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038228-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F++ ++ Hi ++ AUR62038228-RA 110 FECPICGSGFTSEEDVSIHIESC 132 89*****************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSSSSSGKFK GQGRVLGSSS SGPKNPNLTR PSQSVNPNSN QNPSSVQSKP LPQKNSPVSD 60 PRPTSIDGQN GSNSNPDSKK DRPSKDGFDP FDSFITSGER NKNGYSLNVF ECPICGSGFT 120 SEEDVSIHIE SCIVAKTSKN GDGVELDLDL DSDSVGMDGN ENKADSTNKL GGCVGVYLSG 180 NPSDSSVDVV MRLLRNIVKE PENPKFRKIR MGNPKIREAI GEVTGGIELL QEVGFELKEE 240 GGEMWAVMDT PSEDRLLKIK ETVNIMEQAK PDGSVSSAPI VKVDEKVEVE KKVKENEPKI 300 IDREIKVFFS VSESVAARIV LPDSFYQLSS EEVRREAEMR KKKMADSQLL IPKSFKEKQA 360 QAARKSSALK QQGLEFELIH PVPLKRRVIP CFPAPGERAL TLEQEDLVPS ALVKFKPIET 420 DSMVFTGLTN ELLEISEPLG SSSTS*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSSSSSGKFK GQGRVLGSSS SGPKNPNLTR PSQSVNPNSN QNPSSVQSKP LPQKNSPVSD  60
PRPTSIDGQN GSNSNPDSKK DRPSKDGFDP FDSFITSGER NKNGYSLNVF ECPICGSGFT  120
SEEDVSIHIE SCIVAKTSKN GDGVELDLDL DSDSVGMDGN ENKADSTNKL GGCVGVYLSG  180
NPSDSSVDVV MRLLRNIVKE PENPKFRKIR MGNPKIREAI GEVTGGIELL QEVGFELKEE  240
GGEMWAVMDT PSEDRLLKIK ETVNIMEQAK PDGSVSSAPI VKVDEKVEVE KKVKENEPKI  300
IDREIKVFFS VSESVAARIV LPDSFYQLSS EEVRREAEMR KKKMADSQLL IPKSFKEKQA  360
QAARKSSALK QQGLEFELIH PVPLKRRVIP CFPAPGERAL TLEQEDLVPS ALVKFKPIET  420
DSMVFTGLTN ELLEISEPLG SSSTS*