PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62038143-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 32933.5 Da PI: 8.8523 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.5e-06 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AUR62038143-RA 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ AUR62038143-RA 154 WKCDKCSKRYAVQSDWKAHSKVC 176 58*****************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MSNLTSAASG DASVSSGNNN NNRGEPSNSF YFPHHHSDEQ QPSQQPPAKR KRNLPGNPDP 60 DAEVIALSPK SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV 120 CPETSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKVCGTRE 180 YRCDCGTLFS SPSSSLSPNT NLPPQPPTSS SSFFHDMMVN SISSSYDHHD DAFGIAGMST 240 MLGTSKKGGD DTSSLAAFHH SLGDDGSGNN SNSGGGNDGL TRDFLGLRPL SHNDILSIAG 300 L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 117 | KLKQRTNKEVRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 5e-97 | C2H2 family protein |