PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038140-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 366aa MW: 41072.1 Da PI: 4.6973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038140-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l++ ++++am++++y+++ara+dPv G++++i++l++q++ kael+ AUR62038140-RA 29 ACAACKYQRRKCASDCALAPYFPHDRQRQFLNAHKLFGVSNITKIIRNLNPPDKDIAMRTIIYQSDARAKDPVGGCYRIIRELHHQIAYCKAELD 123 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ AUR62038140-RA 124 LVLQQ 128 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MSNCTISNSI ITSNSHQHHH SRISNGTQAC AACKYQRRKC ASDCALAPYF PHDRQRQFLN 60 AHKLFGVSNI TKIIRNLNPP DKDIAMRTII YQSDARAKDP VGGCYRIIRE LHHQIAYCKA 120 ELDLVLQQLE LCKAQVYQQQ HAQLYQIATG LTPQPLDPDS QVDAGTASTP VADNNNNNQQ 180 GTEILTCDND SYQQYQALMR CYYYDEAEQG NNNEQPYIPI SQQQQVQDQN DQYSWVAPPN 240 DDAVLASSNS STSHGDCFVM KNDFGSECDG LEMKPQIQIV ANGAPYDDEK EYGSKFDESS 300 THVDLSCCDL QGDGLKFDHQ QTTELSEEAA LKEENIVLRN PEDESFHHIS EHDLRNAATL 360 FTLTN*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MSNCTISNSI ITSNSHQHHH SRISNGTQAC AACKYQRRKC ASDCALAPYF PHDRQRQFLN  60
AHKLFGVSNI TKIIRNLNPP DKDIAMRTII YQSDARAKDP VGGCYRIIRE LHHQIAYCKA  120
ELDLVLQQLE LCKAQVYQQQ HAQLYQIATG LTPQPLDPDS QVDAGTASTP VADNNNNNQQ  180
GTEILTCDND SYQQYQALMR CYYYDEAEQG NNNEQPYIPI SQQQQVQDQN DQYSWVAPPN  240
DDAVLASSNS STSHGDCFVM KNDFGSECDG LEMKPQIQIV ANGAPYDDEK EYGSKFDESS  300
THVDLSCCDL QGDGLKFDHQ QTTELSEEAA LKEENIVLRN PEDESFHHIS EHDLRNAATL  360
FTLTN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-53	LBD family protein