PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62038058-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family NF-YC
Protein Properties Length: 270aa    MW: 30325.3 Da    PI: 5.9756
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62038058-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC146.65.4e-4647148199
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     qlk fwe+q     +a df+nh+lPlarikki+k+d++v+misa+aPvlls+ace+fi +ltlr+w  +ee kr+tl+k+di+aa++ td fdfl
  AUR62038058-RA  47 QLKGFWESQcqeSSQAVDFRNHSLPLARIKKIMKSDDNVRMISADAPVLLSRACEMFIQDLTLRAWSCTEEGKRKTLQKADISAALSTTDLFDFL 141
                     79*****9975566889****************************************************************************** PP

           NF-YC  93 vdivprd 99 
                     vdi pr+
  AUR62038058-RA 142 VDILPRE 148
                     *****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MDSHWSFNYP DQQLSFVDNT PRFIDQQPQQ PHVHSAPSGS GNLLQQQLKG FWESQCQESS  60
QAVDFRNHSL PLARIKKIMK SDDNVRMISA DAPVLLSRAC EMFIQDLTLR AWSCTEEGKR  120
KTLQKADISA ALSTTDLFDF LVDILPREKP LTSTIPPMNV MMNTASSSLG GICNHHHQHL  180
QQHEGYCVGD AAGTGLNKGL QMNQRVDQQH EQVEIEGGGA VMAWECVLLR EREYAVVRIA  240
VLRSSVGLDV LDSTGWRWFQ VGLCWFWDA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-47NF-YC family protein