PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62038002-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23648.1 Da    PI: 9.9603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62038002-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-22350249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ +
  AUR62038002-RA  3 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGVEAVIIVFSPGQKIFSF 50
                    8******************************************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MARIKNPSHR QVTFSKRRLG LFKKASEICT LCGVEAVIIV FSPGQKIFSF GYPNVDSIVV  60
RYLSRNPTSR QTSSNGTKSE GVGGQQSSTM RELNSQLTKI LDLLEAEKSR GDVFNTLKRK  120
PNQCWWEAPI DKLGLHELEI LSASMEDLKK NIANQSMFLE KTISSSSALG MNKGNGAGVS  180
DQQHFDLKSI EAKIEGFALP DHLIANFHAP KFF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-46M-type_MADS family protein