PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62036822-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 361aa MW: 40191.6 Da PI: 5.0045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62036822-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.3e-15	182	229	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ AUR62036822-RA 182 ASHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 229 58999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDGVVELGYT ERSPLVLATY TTVDPLPIPS DGANNNNEND ETEGEADSDP EAQTILGLPV 60 KLELRYQKGI TVVPDSSDEP SELMQIEIPE DIQLSSPDVV SNNLDSNFPL VAVGPTPSHQ 120 HHTVDSFITT KSTRRWPVMQ QQQLQDPIII SNNLQTPSLD LHYMALGRGK STSGPPHDEL 180 SASHVLAERR RREKLNERFV ILRSLVPFVT KMDKASILGD TIEYVKQLRK KVQELEGRTK 240 SGEERDKRKL QVIEESSSGN EMRVKKTAAQ LQQSNMLEVS IIESDVLVEL QCPYKEGLLL 300 DVMIKLRDMR LEVTTVLSSL NNGLLATELR AKVKENVNGK KPSIIEVKRA VNQKIPQSDS 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDGVVELGYT ERSPLVLATY TTVDPLPIPS DGANNNNEND ETEGEADSDP EAQTILGLPV  60
KLELRYQKGI TVVPDSSDEP SELMQIEIPE DIQLSSPDVV SNNLDSNFPL VAVGPTPSHQ  120
HHTVDSFITT KSTRRWPVMQ QQQLQDPIII SNNLQTPSLD LHYMALGRGK STSGPPHDEL  180
SASHVLAERR RREKLNERFV ILRSLVPFVT KMDKASILGD TIEYVKQLRK KVQELEGRTK  240
SGEERDKRKL QVIEESSSGN EMRVKKTAAQ LQQSNMLEVS IIESDVLVEL QCPYKEGLLL  300
DVMIKLRDMR LEVTTVLSSL NNGLLATELR AKVKENVNGK KPSIIEVKRA VNQKIPQSDS  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	193	ERRRRE
2	189	194	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-45	bHLH family protein