PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62036059-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 411aa MW: 46696.6 Da PI: 6.9215

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62036059-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.5	5.5e-25	282	358	17	92
DUF260 17 vlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 ++apyf++eq + +f ++hk+FGasnv+kll++lp +++++a+ ++ yeA+ar++dP+yG+v++i +lqqq +++++ AUR62036059-RA 282 FFAPYFCHEQgATHFSAIHKVFGASNVSKLLAHLPASDHSEAAITISYEAQARLQDPIYGCVSHIYALQQQCHKTHN 358 59******89*********************************************************988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MRLYAGLPKC FWADAVSTAA YLINRGPSVP LEFKIPEEEW SGKEVSYTHL KTFGCVAYLQ 60 SEKRDKLDPK AIKCYFIGYG CEKYGYRLWD PKNRKIVRHC DITFDESSLY KDNFGGKSVE 120 KESIEDEREF VELDGKVRSD KEVEQVEVEV QIQQPSPQHG AHVPVDSDSS DSDDDDHLET 180 DERVVMGEPV VVHGEPSTPP TGFLEEMGMK QDVCALYSDS QSAVQLAKNP MFHYRTKHIK 240 RRYHYTRSLV KDGTMCLRKI AGSKNPADML TKAVSSDKLR LFFAPYFCHE QGATHFSAIH 300 KVFGASNVSK LLAHLPASDH SEAAITISYE AQARLQDPIY GCVSHIYALQ QQCHKTHNTR 360 IHYSRSKFFR LQIFDGSGPD RPVFSDRSLD KEKTNHKENL ITVNKDDSRL *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MRLYAGLPKC FWADAVSTAA YLINRGPSVP LEFKIPEEEW SGKEVSYTHL KTFGCVAYLQ  60
SEKRDKLDPK AIKCYFIGYG CEKYGYRLWD PKNRKIVRHC DITFDESSLY KDNFGGKSVE  120
KESIEDEREF VELDGKVRSD KEVEQVEVEV QIQQPSPQHG AHVPVDSDSS DSDDDDHLET  180
DERVVMGEPV VVHGEPSTPP TGFLEEMGMK QDVCALYSDS QSAVQLAKNP MFHYRTKHIK  240
RRYHYTRSLV KDGTMCLRKI AGSKNPADML TKAVSSDKLR LFFAPYFCHE QGATHFSAIH  300
KVFGASNVSK LLAHLPASDH SEAAITISYE AQARLQDPIY GCVSHIYALQ QQCHKTHNTR  360
IHYSRSKFFR LQIFDGSGPD RPVFSDRSLD KEKTNHKENL ITVNKDDSRL *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	4e-38	LBD family protein