PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035237-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 529aa MW: 59766.3 Da PI: 6.7393

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035237-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	67	107	2	46
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 +y+GVr++k +gr++AeIrdp + r++lg+f+ta+eA++ + AUR62035237-RA 67 KYRGVRRRK-WGRYAAEIRDPI----NkVRIWLGTFDTAKEAYEVY 107 8***998.******72....35********99999877 PP
2	AP2	25.4	3.5e-08	139	172	11	47
AP2 11 krgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 k g+W A+I +p+ + ++++lg+f++aeeA + + AUR62035237-RA 139 KEGKWSARITHPK----TgAKIWLGTFDSAEEAFRVYK 172 579******95....35************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MKKFRVFCTD PDATDSSSSD EDEKIGEKPA KKKRFVREVT VGSGEEAPEK LVIDGIPEEE 60 TPGKAVKYRG VRRRKWGRYA AEIRDPINKV RIWLGTFDTA KEAYEVYYMK KLEFDALKTM 120 EKSISVELKS DDLVDSRVKE GKWSARITHP KTGAKIWLGT FDSAEEAFRV YKMKEVEFEE 180 RFKGKEVRRG EGFESKKVCS VVRELEYGRF EARVWHPKMR SYVFVGVYDS RDRAEIAAKM 240 KKGQFKKRYR SLKRITSNKH KSGDWPLRVG CESGSSSENP SNGVGCVGRE IVVGLAAPML 300 PSEDDAMKQR ATNSEFVKAG DGEEVGDVDL PAGVKLTKSG RFGVRVTHPG TGTEHWLRSY 360 GTLEEALKAF HRKTAEFQEE FKSRKRVRPD ELINFPKKSE GRFLNGSRTS VFVDVEDDES 420 SGTVSVMVKN EVVHDPMELE YGIVHGSPTS VLEVESVNCG DVSVKESKGS DISSENQKQP 480 FVPFSSFDEA VRLGIMNEYG ELLGEYSKYD EPVWLSNDDE VGDTTYYF*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MKKFRVFCTD PDATDSSSSD EDEKIGEKPA KKKRFVREVT VGSGEEAPEK LVIDGIPEEE  60
TPGKAVKYRG VRRRKWGRYA AEIRDPINKV RIWLGTFDTA KEAYEVYYMK KLEFDALKTM  120
EKSISVELKS DDLVDSRVKE GKWSARITHP KTGAKIWLGT FDSAEEAFRV YKMKEVEFEE  180
RFKGKEVRRG EGFESKKVCS VVRELEYGRF EARVWHPKMR SYVFVGVYDS RDRAEIAAKM  240
KKGQFKKRYR SLKRITSNKH KSGDWPLRVG CESGSSSENP SNGVGCVGRE IVVGLAAPML  300
PSEDDAMKQR ATNSEFVKAG DGEEVGDVDL PAGVKLTKSG RFGVRVTHPG TGTEHWLRSY  360
GTLEEALKAF HRKTAEFQEE FKSRKRVRPD ELINFPKKSE GRFLNGSRTS VFVDVEDDES  420
SGTVSVMVKN EVVHDPMELE YGIVHGSPTS VLEVESVNCG DVSVKESKGS DISSENQKQP  480
FVPFSSFDEA VRLGIMNEYG ELLGEYSKYD EPVWLSNDDE VGDTTYYF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	5e-21	ERF family protein