PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035221-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 346aa MW: 39086 Da PI: 8.1379

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035221-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20	1.4e-06	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C H+ H++v AUR62035221-RA 16 ARACDCCIRKRARWYCPADDAFLCQSCDGIVHSAnllarrHERV 59 578************************99999557777778766 PP
2	CCT	68.8	1.5e-23	291	334	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ AUR62035221-RA 291 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 334 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MISNKKIANA VSGKTARACD CCIRKRARWY CPADDAFLCQ SCDGIVHSAN LLARRHERVR 60 LKTASLKRAV DDPRRLDLPS WHRGLTRKPR SPRHGKHQSK FEERNPIHVI VPELGMEETT 120 SSQDSESEEQ LLYRVPIYDP FITDFRSSPT VDDIRPLELE GGSDVSKSTI SNSKQSPDNY 180 MPSDMDLEEF AADVETLLGK GLDDELYGIE ELGLLDCSPS INYSNINENY IGKIVKEVDE 240 LCDEGEMIRG YEIEAESNNG TCGLERSRHQ IYGEYQLGGF VGNGGIGDGG REARVSRYRE 300 KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRSSFAAAN AAFPK*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MISNKKIANA VSGKTARACD CCIRKRARWY CPADDAFLCQ SCDGIVHSAN LLARRHERVR  60
LKTASLKRAV DDPRRLDLPS WHRGLTRKPR SPRHGKHQSK FEERNPIHVI VPELGMEETT  120
SSQDSESEEQ LLYRVPIYDP FITDFRSSPT VDDIRPLELE GGSDVSKSTI SNSKQSPDNY  180
MPSDMDLEEF AADVETLLGK GLDDELYGIE ELGLLDCSPS INYSNINENY IGKIVKEVDE  240
LCDEGEMIRG YEIEAESNNG TCGLERSRHQ IYGEYQLGGF VGNGGIGDGG REARVSRYRE  300
KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRSSFAAAN AAFPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	318	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-53	CO-like family protein