PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033947-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 533aa MW: 60044.7 Da PI: 8.9258

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033947-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.4e-13	347	391	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++iN++f+ Lr+llP+ +K +Ka++L+ + eY++sL AUR62033947-RA 347 HMISERKRREKINESFQALRSLLPPG-----TKKDKASVLRTTKEYLSSL 391 8899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MDSVFQLDNG DRVSYLCSLM QSFCASYICL WTYSPHLKIL YCEDGHFKEE ASSFTGVSIS 60 GRLFNEYKQS VFPVGNDFVP GLAFRDKNPS LKLQEIDLQR LASIELQRRF YKTAVFFGCE 120 RGEIELGMSN NQQNLEMKIQ RLFSTMEFSR PTDQQNKPSS SSSQSMDSPE YTSLFYNFAS 180 SSTFHLQPEQ PAAVIRETHP SIVDQHRTIN TQSIPITTTT VTNTATSSVN APQINHPLLQ 240 NIPFPTAETT DAALTKAYLA ILSSPSSSST GGEKSCPYGY QARQRASAFT SYHSSCSGSS 300 STQKRLDLRR QTLLKRAIAF YRGINYRRIQ ELSLQGPGRP TSNQLHHMIS ERKRREKINE 360 SFQALRSLLP PGTKKDKASV LRTTKEYLSS LKAQLSEVNK RNQLMEAQLK MRNEPKSTNT 420 TSVDVSSNER LAIRVTPVSE STSSRGRMVD LQVILRMETS VPDLVIRVLE FLKQVKEATM 480 VSMEAQTHQE TTSTNNQFPT NWVTFRLRIE GEEWDESAFI EAIGRLLADL AS*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MDSVFQLDNG DRVSYLCSLM QSFCASYICL WTYSPHLKIL YCEDGHFKEE ASSFTGVSIS  60
GRLFNEYKQS VFPVGNDFVP GLAFRDKNPS LKLQEIDLQR LASIELQRRF YKTAVFFGCE  120
RGEIELGMSN NQQNLEMKIQ RLFSTMEFSR PTDQQNKPSS SSSQSMDSPE YTSLFYNFAS  180
SSTFHLQPEQ PAAVIRETHP SIVDQHRTIN TQSIPITTTT VTNTATSSVN APQINHPLLQ  240
NIPFPTAETT DAALTKAYLA ILSSPSSSST GGEKSCPYGY QARQRASAFT SYHSSCSGSS  300
STQKRLDLRR QTLLKRAIAF YRGINYRRIQ ELSLQGPGRP TSNQLHHMIS ERKRREKINE  360
SFQALRSLLP PGTKKDKASV LRTTKEYLSS LKAQLSEVNK RNQLMEAQLK MRNEPKSTNT  420
TSVDVSSNER LAIRVTPVSE STSSRGRMVD LQVILRMETS VPDLVIRVLE FLKQVKEATM  480
VSMEAQTHQE TTSTNNQFPT NWVTFRLRIE GEEWDESAFI EAIGRLLADL AS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERKRRE
2	352	357	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-49	bHLH family protein