PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033888-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 492aa MW: 53035.1 Da PI: 7.3574

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033888-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.8	8.7e-11	171	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d ++ g rk + g ++ +e+Aa+ ++ a++k++g AUR62033888-RA 171 SQYRGVTKHRWTGRFEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARSYDLAALKYWG 227 78*****************77776664346655.77****************97 PP
2	AP2	46.3	1e-14	272	321	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g AUR62033888-RA 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 321 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MFLSPPPLLP QQPLSSGPIC FDHGGGGDSS SDYFHTPLTV MPLKSDGSLC IMEAFTRSQP 60 PQEDDLLKNW ETTVDNIGST TNTLASVAAP TVGGCGDLQS LSLSMSPGSQ SSCITAPATT 120 TAASTTANVS SGSVCVGVVA MDTKKRGFGK VGQSKQTVHR KSIDTFGQRT SQYRGVTKHR 180 WTGRFEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARSYDL AALKYWGLST HTNFPIENYK 240 QEIEEMKNMT RQEYVANLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 300 TFSTQEEAAE AYDVAAIKFR GTNAVTNFDI SRYHVEKIMS SNTLLAGEQA RRNKLELIKA 360 FEESPSSTEN ITVGDLTVAN NGNDSPGEWK MVSIDPNPSF SLGLQDLVEL EMASPSQKLG 420 SAAHFSSASS LVTSLNSSRE GSPDENMSST TSNSMVFPWV ASAGQLTPSA AVAATAIPLA 480 HVPVFAAWND A*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MFLSPPPLLP QQPLSSGPIC FDHGGGGDSS SDYFHTPLTV MPLKSDGSLC IMEAFTRSQP  60
PQEDDLLKNW ETTVDNIGST TNTLASVAAP TVGGCGDLQS LSLSMSPGSQ SSCITAPATT  120
TAASTTANVS SGSVCVGVVA MDTKKRGFGK VGQSKQTVHR KSIDTFGQRT SQYRGVTKHR  180
WTGRFEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARSYDL AALKYWGLST HTNFPIENYK  240
QEIEEMKNMT RQEYVANLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTQEEAAE AYDVAAIKFR GTNAVTNFDI SRYHVEKIMS SNTLLAGEQA RRNKLELIKA  360
FEESPSSTEN ITVGDLTVAN NGNDSPGEWK MVSIDPNPSF SLGLQDLVEL EMASPSQKLG  420
SAAHFSSASS LVTSLNSSRE GSPDENMSST TSNSMVFPWV ASAGQLTPSA AVAATAIPLA  480
HVPVFAAWND A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-129	AP2 family protein