PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62033532-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 124aa MW: 13646.9 Da PI: 10.1129 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.1 | 1.8e-21 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+nks++qvtfskRr+g++ KA+EL+ C++e av+ fs+ gk+y + AUR62033532-RA 19 PIDNKSRKQVTFSKRRAGLFRKASELCSTCGVECAVVTFSPAGKVYSF 66 59********************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MAAVGKISGK GKRKIDIIPI DNKSRKQVTF SKRRAGLFRK ASELCSTCGV ECAVVTFSPA 60 GKVYSFGHPN ADEIIQRAFP TFRSYEEVLA QPIEDMGLDD LERFKVALEG LRSRVALKVK 120 EIN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-27 | M-type_MADS family protein |