PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033480-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 483aa MW: 55376.1 Da PI: 6.6917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033480-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	65	87	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +++ G+C+ GdrC+F H AUR62033480-RA 65 TVPCYYYYN-GFCNKGDRCPFLHE 87 89*****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
GVECEYRHSE MARLNPRDCW YWMSGNCLNP TCAFRHPPLE SHNEAPTDAA PPLLNQSSVS 60 ATKTTVPCYY YYNGFCNKGD RCPFLHEPGG ALGLNTKMAN PVDAAVHLLD SKTSGRVETE 120 LKPAEKHLIP SEMTTTSGSR LQNEQKHQAQ HYATIPEPST ISKQTYIPER EETFAVKTVT 180 LQHAERSNKS EFEPSLESDQ SSEDQIDENI VRDEWCESSP GFDVLVEGET EDLVYEDDPE 240 DMRSIDGNDG GNEHLFMPHG YAHQAEYDEK EYFGNGHYEP SEYINDELRT DLREFPSRHT 300 QDRGTRRIVA RKRNILCVET PVGGCHDVDL RDYLRKRRMV DGYLETRDLR HVRDGRQEKL 360 QRHASNQRVH GRLASKVERP GVRLPRRRNS AVDAEQRGRP RNSQHNGYRQ YNGMRSRQSL 420 SERRTHSKRE RYAQESTTVY EPKNHDAVKA DRNEGHLHKN GSADFEGPKP LSEILKDKKK 480 MS*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

GVECEYRHSE MARLNPRDCW YWMSGNCLNP TCAFRHPPLE SHNEAPTDAA PPLLNQSSVS  60
ATKTTVPCYY YYNGFCNKGD RCPFLHEPGG ALGLNTKMAN PVDAAVHLLD SKTSGRVETE  120
LKPAEKHLIP SEMTTTSGSR LQNEQKHQAQ HYATIPEPST ISKQTYIPER EETFAVKTVT  180
LQHAERSNKS EFEPSLESDQ SSEDQIDENI VRDEWCESSP GFDVLVEGET EDLVYEDDPE  240
DMRSIDGNDG GNEHLFMPHG YAHQAEYDEK EYFGNGHYEP SEYINDELRT DLREFPSRHT  300
QDRGTRRIVA RKRNILCVET PVGGCHDVDL RDYLRKRRMV DGYLETRDLR HVRDGRQEKL  360
QRHASNQRVH GRLASKVERP GVRLPRRRNS AVDAEQRGRP RNSQHNGYRQ YNGMRSRQSL  420
SERRTHSKRE RYAQESTTVY EPKNHDAVKA DRNEGHLHKN GSADFEGPKP LSEILKDKKK  480
MS*