PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62033266-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 359aa    MW: 39305.8 Da    PI: 7.2367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62033266-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06144164526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd C FaHg
  AUR62033266-RA 144 ACSEFRK-GGCKKGDGCEFAHG 164
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MMIGETRRHH QIDVPPWQES YSPTTVRISS PASSPPLQSN SGGAGSNHLP NSPTYYDAVL  60
ASLRRYLLAD AVDKESSPAA ATVDYSSEVD FLSGEYDDDF FMYDFKVRKC TRARAHDWTE  120
CPFAHPGEKA RRRDPRKFSY SGTACSEFRK GGCKKGDGCE FAHGVFECWL HPTRFRTQAC  180
KDGPGCKRRV CFFAHTPDQL RTGPGLGSPR GSGLVSVSED SAINTPSVGD LMASIRNLQL  240
NKVKSMPNSW GSHPMHVNGS PVFGSPRGVG TPTAISRAGF FSLPTTPTRP RIGYWDNQDI  300
GEEDEQPVME RVESGRELRA RMFEKLSKEN PLDGSGSPLS TSAPGSSPDF GWVCDLIE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-94C3H family protein