PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62032984-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 441aa    MW: 49693.5 Da    PI: 4.5038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62032984-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.2e-151048240
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    +ien+ +r+++f + + +++KKA E S+LCd+ v+vi+f
  AUR62032984-RA 10 FIENQKKRNISFRQKKRTLIKKAREFSILCDVPVCVIVF 48
                    79***********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MGRAKLARVF IENQKKRNIS FRQKKRTLIK KAREFSILCD VPVCVIVFPF VEGNKKVVQP  60
EIFSYKGEQE PQEIVNSDDS TTINPELGRE MINRYLAYPK DFQKSKRSLN LSDVLKDVNV  120
EKSSSIDQDL HNYTNLSKFT NDQLIELLGK LDHKIDSVKS RINVIKNVSK NDGFDAEQQE  180
IEVLSDDDGF LLSDLDIDLD YDAMFEDLKG LTAPDYEGFY NMDMMGVTPN CIEIDQGSRF  240
ADNYPLQCAP MMGTTPSPTN NTDNNHGSRF ADNYLLECIP MMSTTSTNNT DNNQESRFAG  300
NYPLQRAPMM GTTSTSYTDN NQGFLQCVPM MGTTSTSYTD NNQGSSYADS YPLQCAPMMD  360
TTSTSYTDNN QGSDNYPLQG NSMMVHSIYN NGVLGPQFAD NYPLQCNLMM NRSIYNADLG  420
QRFVDNYLLQ HSYPMIGHAV *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-10M-type_MADS family protein