PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032802-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 381aa MW: 42799.1 Da PI: 5.9436

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032802-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.1	1.7e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en s rq t+skR++gilKKA+ELS+LCd++ a+++fs+ gk AUR62032802-RA 9 KRLENASSRQATYSKRKHGILKKAQELSILCDIDLALVMFSPGGK 53 689**************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGKVKLDIKR LENASSRQAT YSKRKHGILK KAQELSILCD IDLALVMFSP GGKPSLCCGK 60 HSIEEVIARL NQLPPQERTK RKLEGLEALK KAYRKKSEHD VNMEDFLDSR VGSLENCFPQ 120 DVTDQASRLQ TRIAEIHERL WYWTNPDCVS DFGLLMQMED SLEKSLGQIQ REKENFQKRR 180 RLALENELKE SMQLPFQSNG GQQLQPLLWT PSDSFQNMAL IQEPKLPTQR DIESCTGSTS 240 GSYFGCPSTS SKSEANSPGQ LSGIDNIGQD AFQGLQFGGM YSYLPYGLNM PGDNSNLQAM 300 LGLDQRQNTL VYDAGKNYQQ TFPYHDTSNN FPPDTPADFG YGDLSNYQKS IVPAPAMPSM 360 YERMTGDSNH LLFDNTPHNT *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGKVKLDIKR LENASSRQAT YSKRKHGILK KAQELSILCD IDLALVMFSP GGKPSLCCGK  60
HSIEEVIARL NQLPPQERTK RKLEGLEALK KAYRKKSEHD VNMEDFLDSR VGSLENCFPQ  120
DVTDQASRLQ TRIAEIHERL WYWTNPDCVS DFGLLMQMED SLEKSLGQIQ REKENFQKRR  180
RLALENELKE SMQLPFQSNG GQQLQPLLWT PSDSFQNMAL IQEPKLPTQR DIESCTGSTS  240
GSYFGCPSTS SKSEANSPGQ LSGIDNIGQD AFQGLQFGGM YSYLPYGLNM PGDNSNLQAM  300
LGLDQRQNTL VYDAGKNYQQ TFPYHDTSNN FPPDTPADFG YGDLSNYQKS IVPAPAMPSM  360
YERMTGDSNH LLFDNTPHNT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	182	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	6e-71	M-type_MADS family protein