PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032758-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 35203.2 Da PI: 9.5128

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032758-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	98	152	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k AUR62032758-RA 98 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 152 778899***********************************************98 PP
2	HD-ZIP_I/II	127.9	4.4e-41	98	188	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk AUR62032758-RA 98 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 188 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MELALSLGNR GVESNSVGYC MGSSRLTAEK EEDDDQREIN GGNSSSSSDP SRLQLDLLPL 60 SPVPRSIQPP PPLRFPWLTD NWATTSKGSD DEENGSTRKK LRLSKEQSAF LEESFKEHHT 120 LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLQKE 180 LQELRALKTS QPFYMQLPAT TLTMCPSSVA RRRLTLIVAR HRQSSPPVSL SSQVSILSFS 240 ISLKFDCVVC YVLSVLSPLL FRVAGHRCRR RSFSPVSHWP SRRSGMYTYS LVSCDSHIPC 300 SLTDFTVALP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	TRKKLRL
2	147	155	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-61	HD-ZIP family protein