PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62032118-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 563aa MW: 62082.2 Da PI: 7.2991

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62032118-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.5	1.6e-42	206	281	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ak+yh+rhkvC+vhsk+p+v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q AUR62032118-RA 206 CQVYGCHKDLSSAKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 281 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MILIVFSGAK HQIKNLIANF CLGISYVVFG ILILLYIMES WWFDSLDKGF ESNEAISQSD 60 AIVRGKNVLI GWEHKITNED SVLTPSQQSV ENRSYSELGI AEMVRIQCPT DSTRNELEDN 120 GSVGDFYSSY VTTNAFSGDD ESSSKFSSSV MDSSSRESSL IDLKLGGFGD NPNSSSTRTA 180 TAHVLSSADS PTPPKRARVS SQAVHCQVYG CHKDLSSAKD YHKRHKVCDV HSKTPKVIVN 240 GIEQRFCQQC SRFHLLGEFD DGKRSCRKRL AGHNERRRKP QVGFSNRNGR SFQSYTGSNF 300 QGFTPTSTSF ICQDILPRGI SHTVKYGTND WVKHIKVEDG TGCTQMPTYS CINRQLQPKS 360 ILPPQDFEKQ FPFIDNTNNT GTQFPFGKNV NQHTPVIVSH SLFQTNSPRN EDLALLDATS 420 TVQELAGISE SGCALSLLSF QSQNSSGHSS AMPGCHPVII PSSSPQYSVN EVSEKIFGNG 480 AQALKSEVQN RYSSVIVSST GRNQPSFMSV LNYGNNAHSE FGNEIHHRSK FMNIKDHLLC 540 EDGTTIDLLQ LSSQLHGKPE AV*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MILIVFSGAK HQIKNLIANF CLGISYVVFG ILILLYIMES WWFDSLDKGF ESNEAISQSD  60
AIVRGKNVLI GWEHKITNED SVLTPSQQSV ENRSYSELGI AEMVRIQCPT DSTRNELEDN  120
GSVGDFYSSY VTTNAFSGDD ESSSKFSSSV MDSSSRESSL IDLKLGGFGD NPNSSSTRTA  180
TAHVLSSADS PTPPKRARVS SQAVHCQVYG CHKDLSSAKD YHKRHKVCDV HSKTPKVIVN  240
GIEQRFCQQC SRFHLLGEFD DGKRSCRKRL AGHNERRRKP QVGFSNRNGR SFQSYTGSNF  300
QGFTPTSTSF ICQDILPRGI SHTVKYGTND WVKHIKVEDG TGCTQMPTYS CINRQLQPKS  360
ILPPQDFEKQ FPFIDNTNNT GTQFPFGKNV NQHTPVIVSH SLFQTNSPRN EDLALLDATS  420
TVQELAGISE SGCALSLLSF QSQNSSGHSS AMPGCHPVII PSSSPQYSVN EVSEKIFGNG  480
AQALKSEVQN RYSSVIVSST GRNQPSFMSV LNYGNNAHSE FGNEIHHRSK FMNIKDHLLC  540
EDGTTIDLLQ LSSQLHGKPE AV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-45	SBP family protein