PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62031950-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 431aa    MW: 49254.4 Da    PI: 7.4261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62031950-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.79.4e-107144302374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.............. 81 
                     ++lL++cAe +s +++  a++lL+ +s+  a + gd+++Rl+ yf  AL++r++r   +l ++ ++  +++ n   +la +              
  AUR62031950-RA  14 RQLLVTCAELISRSEFFSANRLLSLISTDfALQFGDSTERLVYYFCIALRERINR---HLLSTTTCVMNPSINIPVTLAHQrpifsssspqiilp 105
                     689************************99899999********************...66666666666655544444444567778999***** PP

            GRAS  82 .....................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspe 151
                                            +++v+P+++f+hltaNqaIleaveg + +Hi+D+++++G+QWp+Llqa+ +R+    ++ p++RiTg ++  
  AUR62031950-RA 106 nqiprpsriveqdvttryssyLSLNQVTPFIRFTHLTANQAILEAVEGYSSIHILDMNVMHGVQWPPLLQAIMERSstlgRSCPTIRITGAAR-- 198
                     **************998876444*****************************************************8877779**********.. PP

            GRAS 152 sgskeeleetgerLakfAeelgvpfefnvl.........vak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                       +   l +tg+rL++fAe+lg++fef  l         +++  +++l  ++Lr+++ +Eala+n+   lh ll+ + +++s  +++L+ vk+l+
  AUR62031950-RA 199 --DPSLLDRTGDRLRRFAESLGLEFEFCDLilydsevvdHSEaVIHALMDHRLRFDQvKEALAINCGDYLHCLLR-EYDTRS-LRRFLHKVKTLN 289
                     ..9*************************99788887444222244555667778888*****************4.455555.699********* PP

            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                     Pkv+++ e+eadhn++ Fl rf+eal++y a+fdslea+lp++s+er+ vE++++g+ei++vv   g++r+ rh+++e+W+  ++++GFk+++ls
  AUR62031950-RA 290 PKVLTLGEREADHNHPLFLGRFVEALDHYGAVFDSLEATLPPQSRERVAVEEAWFGEEIKDVVGEDGERRKDRHQRFESWEIVMRSSGFKSLALS 384
                     *********************************************************************************************** PP

            GRAS 331 ekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                      +  +qaklllr ++ s+gy+++  ++++l+lgWk+rpL+svS+W+
  AUR62031950-RA 385 PFSLSQAKLLLRLHYpSEGYQLQvVKKNCLFLGWKNRPLYSVSSWQ 430
                     ***********************7889******************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
LLSTSPQSSV IHPRQLLVTC AELISRSEFF SANRLLSLIS TDFALQFGDS TERLVYYFCI  60
ALRERINRHL LSTTTCVMNP SINIPVTLAH QRPIFSSSSP QIILPNQIPR PSRIVEQDVT  120
TRYSSYLSLN QVTPFIRFTH LTANQAILEA VEGYSSIHIL DMNVMHGVQW PPLLQAIMER  180
SSTLGRSCPT IRITGAARDP SLLDRTGDRL RRFAESLGLE FEFCDLILYD SEVVDHSEAV  240
IHALMDHRLR FDQVKEALAI NCGDYLHCLL REYDTRSLRR FLHKVKTLNP KVLTLGEREA  300
DHNHPLFLGR FVEALDHYGA VFDSLEATLP PQSRERVAVE EAWFGEEIKD VVGEDGERRK  360
DRHQRFESWE IVMRSSGFKS LALSPFSLSQ AKLLLRLHYP SEGYQLQVVK KNCLFLGWKN  420
RPLYSVSSWQ *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-117GRAS family protein