PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030932-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 404aa    MW: 45564.1 Da    PI: 4.382
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030932-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-141048240
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    +i n+ +r+  f + +++++KKA+ELS+LCd+ v+viif
  AUR62030932-RA 10 FIVNEKKRNLYFRQKKKTLIKKASELSILCDVPVCVIIF 48
                    7899**********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MGKEKSLRQF IVNEKKRNLY FRQKKKTLIK KASELSILCD VPVCVIIFPY VEGNKISVKP  60
EIFSYTGKEE CQNTQSAINY NVTTSNPELA RDIINRYLAI SKDVRSNKRS LNLSDVLKDV  120
NEENLVKRDQ DLYNIRCKST NLSEFTDEQL VELLGNLEHK LDSVTRRIAA IKSINNHGFA  180
ADQQEIQAFN VDNLLLSNFV EMFATADYEG KYDMNMMSPS PSSHTDIDQG TRFADYYPLQ  240
CIPKIEPTLI GYNNFNQGLG FADDYPLQCI PTMSLTPTSY TDVDQGSGFA NNCSLQYIPA  300
MSPTTSYTDV DQGSGFADDY PLQCIPMMGC SIYNGDIGPQ FVDNFPLQCD YSMMSTGYCN  360
QQSEFTDNML LQCNPIYYHN QEQGSDGDIS GMQSYSTELS YDV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-08M-type_MADS family protein