PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030877-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 301aa    MW: 32177.8 Da    PI: 8.6794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030877-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.2e-24132179249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     +ienk ++qv fskRr+g++KKA+EL++LC+ae+av+ fs+ gk++++
  AUR62030877-RA 132 KIENKARKQVAFSKRRKGVFKKASELCTLCNAEIAVLTFSEAGKVFTF 179
                     79*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MWVVFSRLSL VFLGLWAVFS GVLVVLGAVD GVYFGAVSGV FEVVGVFGAV DGVFGVVGGV  60
FGVVGGVFGG FRWCFWGCGW CFRGQSVVFS RASAGSGGTL IAFTALLKTM SMVEENQVRS  120
KPQGKRKIAI AKIENKARKQ VAFSKRRKGV FKKASELCTL CNAEIAVLTF SEAGKVFTFG  180
HPSADEVINR YINSSTSSPL SLSLDSSSVT NEHVGKEKLS HAATCSDEKD LSWWQKPVEG  240
LGLEELEKFM NSLIELRINV ASKIGNCWSN NNNVGSSANT PKSGLDLNEA YNPKTNGADE  300
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-31M-type_MADS family protein