PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62030617-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24657 Da PI: 7.072 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.9 | 2.4e-45 | 13 | 111 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la AUR62030617-RA 13 PCAACKLLRRRCAPDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQELPFHQRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQTQLA 107 7********************************************************************************************** PP DUF260 96 llke 99 ++++ AUR62030617-RA 108 VAQA 111 9987 PP | |||||||
2 | DUF260 | 57.5 | 4e-18 | 111 | 165 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++e AUR62030617-RA 111 AEELPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAE 165 57899*********************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MKENGRKQGA VSPCAACKLL RRRCAPDCVF APYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPFHQRGDAV SSMVYEANAR IRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEELPMHQRG 120 DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQAQLA LAQAEVVHMR MRQYSDKTRV 180 DHHQGTSSPE NSPSSKIVSS QAKSLFMDMV VDQPNMEESL WSC* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-67 | LBD family protein |