PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62030240-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20220.1 Da PI: 10.8248 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie +s r vtfskRr g +KKA+ELS+LC+ae+a+i+fs+ gk + AUR62030240-RA 9 KKIEKSSSRLVTFSKRRSGAFKKANELSTLCGAEIAIIVFSPGGKPF 55 68****************************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MGRRKLEMKK IEKSSSRLVT FSKRRSGAFK KANELSTLCG AEIAIIVFSP GGKPFSFGKP 60 NIETVVNRFQ NRNQKRSRSH ENGSRASNKK TQKRVQKLNH ELINLDAQVE SENQKNEKFN 120 QWGNNCLFEG KQPIEQLDLN HLKIFKRQLN DLCTNSHSQV MEFQASQSLL LLANME* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-39 | M-type_MADS family protein |