PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029984-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 981aa MW: 108866 Da PI: 6.7362

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029984-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	6.1e-41	151	226	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak+yhrrhkvCevhsk ++++v + +qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+ AUR62029984-RA 151 ACQVEGCTADLSNAKDYHRRHKVCEVHSKVSEAFVGNFMQRFCQQCSRFHNLPEFDEGKRSCRRRLAGHNKRRRKT 226 5*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence
MEAEMGGKAD VYSSAVMPVS DLKAVGKKTL EWDLNDWKWD GDLFLATPLN TTHTPLDCRS 60 IQLFPLGPEL ATNINVGSEE ISKTNEKGKR EMEKRRRFVV VPHEEVNEEG RPSNMKLGEQ 120 VYPIAEDEAD KLEGKSVKKS KSLGTGTSQP ACQVEGCTAD LSNAKDYHRR HKVCEVHSKV 180 SEAFVGNFMQ RFCQQCSRFH NLPEFDEGKR SCRRRLAGHN KRRRKTLSET SPNGGSLTDE 240 KSAGYLLVSL LRILSNLHSN GYDETKDQDL LSHLLRNLAS QVSGSNLPEL QQGFQRVLNA 300 GISVGIPEKN PSSAQELCQA VPSAEAHIGL LTRENQHQKE KTQYASQPGI FHPADGSIAT 360 KGSLPGAYLG IDLNNVYDDS QEFVDIPGNG HGSIACAYWP EHLQKSSPPQ TSGISDSNSG 420 HSSSSGSDSQ GRTDRIVFKL FGKDPDDLPH QLRTQILDWL SHKPSDIEGY IRPGCIVLTI 480 YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD ALFSCAEGRV 540 VLDTPLPFKS RDSRISSISP IAVPAAQTVQ LVVKGSNLSG PTSRLLCAIE GKYLVQDSCC 600 YSLVDSTAAE QDEVQSLSFH CSIPDVVGRG FIEVEDYGLS GCFFPFIVAE PEICSEICML 660 ERVMEIVGTD EGIDRRNVAL EFIHEMGWLL HTNRVSSMSG QTNIQLDLFS FVRLKWLIDF 720 SVDHDWCAVL RKLLDLLFSG IVDTGHHASV ENALSEMPLL HTAVQRNSRS MVEFLLRYIP 780 RKAKNTKVSD ESPSSFLFRP DVTGSNGLTP LHLAASCAGF ENMLDALLED PGMVGIRAWE 840 NARDSTGLTP KDYAYLRGHN HYIVLFQSKV NKISSGKHVV VDILGLSNLN SKQKQSDELK 900 SAKFNSLYTE KRQISQNCKL CVQRPNYGFR GTSLTCRPVV MSLVTIAVVC VCTALFFKSM 960 PRVCYVFLPF RWDTLKYGAV *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence

MEAEMGGKAD VYSSAVMPVS DLKAVGKKTL EWDLNDWKWD GDLFLATPLN TTHTPLDCRS  60
IQLFPLGPEL ATNINVGSEE ISKTNEKGKR EMEKRRRFVV VPHEEVNEEG RPSNMKLGEQ  120
VYPIAEDEAD KLEGKSVKKS KSLGTGTSQP ACQVEGCTAD LSNAKDYHRR HKVCEVHSKV  180
SEAFVGNFMQ RFCQQCSRFH NLPEFDEGKR SCRRRLAGHN KRRRKTLSET SPNGGSLTDE  240
KSAGYLLVSL LRILSNLHSN GYDETKDQDL LSHLLRNLAS QVSGSNLPEL QQGFQRVLNA  300
GISVGIPEKN PSSAQELCQA VPSAEAHIGL LTRENQHQKE KTQYASQPGI FHPADGSIAT  360
KGSLPGAYLG IDLNNVYDDS QEFVDIPGNG HGSIACAYWP EHLQKSSPPQ TSGISDSNSG  420
HSSSSGSDSQ GRTDRIVFKL FGKDPDDLPH QLRTQILDWL SHKPSDIEGY IRPGCIVLTI  480
YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD ALFSCAEGRV  540
VLDTPLPFKS RDSRISSISP IAVPAAQTVQ LVVKGSNLSG PTSRLLCAIE GKYLVQDSCC  600
YSLVDSTAAE QDEVQSLSFH CSIPDVVGRG FIEVEDYGLS GCFFPFIVAE PEICSEICML  660
ERVMEIVGTD EGIDRRNVAL EFIHEMGWLL HTNRVSSMSG QTNIQLDLFS FVRLKWLIDF  720
SVDHDWCAVL RKLLDLLFSG IVDTGHHASV ENALSEMPLL HTAVQRNSRS MVEFLLRYIP  780
RKAKNTKVSD ESPSSFLFRP DVTGSNGLTP LHLAASCAGF ENMLDALLED PGMVGIRAWE  840
NARDSTGLTP KDYAYLRGHN HYIVLFQSKV NKISSGKHVV VDILGLSNLN SKQKQSDELK  900
SAKFNSLYTE KRQISQNCKL CVQRPNYGFR GTSLTCRPVV MSLVTIAVVC VCTALFFKSM  960
PRVCYVFLPF RWDTLKYGAV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	EKRRRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein