PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029983-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 1190aa MW: 132136 Da PI: 7.3325

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029983-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.9e-40	151	227	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC a+ls+ak+yhrrhkvCevhsk ++++v++++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+ AUR62029983-RA 151 ACQVEGCMANLSNAKDYHRRHKVCEVHSKVSEAFVRNVMQRFCQQCSRFHALPEFDEGKRSCRRRLAGHNKRRRKTL 227 5*************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence
MEAGMGGITD VYSSAVLPVS DPKAVGKKTL EWDLNDWKWD GDLFLATPLN TTHTPLDCRS 60 KQLFPLGPEL AMNNNVGSEE ISITNEKGKR EMEKRRRVVV VPHEELNEEG RPLNLKLGEQ 120 VYPIAEDEAD KLEGKSVKKS RSAGTGTSQP ACQVEGCMAN LSNAKDYHRR HKVCEVHSKV 180 SEAFVRNVMQ RFCQQCSRFH ALPEFDEGKR SCRRRLAGHN KRRRKTLPET SPNVGSLTDE 240 KSAGYLLVSL LRILSNLHSN GSDETKDQDL ISHLLRNLAS QVSGSNLPEL QQGSQRLLNA 300 GISVGIPEKN PSSAQELCQA VPSAEAHIGL LTRENQHQKE KTQYASQPGI FHPADGSIAT 360 KGSVPRAYLG IDLNNVYDDS QECVDIPGNG HGSIACAYWP EHLQKSSPPQ TSGISDSNSG 420 HSSSSGSDSQ GRTDRIVFKL FGKDPDDLPH QLRTQILDWL SHKPSDIEGY IRPGCIVLTI 480 YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD GRVVLDTPLP 540 FKSRGSQISS ISPIAVPAAQ TVQLVVKGSN LSGPTSRLLC AIEGRYLVQD SCYSLVESTA 600 EQDEVQSLSF HCSIPNVVGR GFIEVEDYGL SGCFFPFIVA EPEICSEICM LERVMETVGT 660 DEGINRRNDA LEFIHEMGWL LHADRLSSMS GQPNIQLDLF PFVRLKWLID FSMDHDWSAV 720 LRKLLDLLFS GIVDTGNHAS VKNALSEMPL LHTAVQRNSR SMVEFLLRYI PKKVKNTKGS 780 EQKQSHYEPP ISFLFRPDVT GSNGLTPLHL AASCAGFENI LDALLEDPGM VGIGAWENAR 840 DSTGLTPKDY AYLRGHNHYI VLFQSKVNKI SSGKHVVVDI LGLSNLNSKQ KQSDELKSAK 900 FNSLYTEKRQ ISQNCKLCVQ RPNYGFRGTS LTCRPVVMSL VTIAVVCVCT ALLFKKKRSD 960 EAEKLAVIVD VLVQNRFELI EEINTSFVLG VGWDLIMEMQ KLEKTSNEPR IVESYHFVSV 1020 LAESEYGLQI HDLSSEIMYR LDLYAFLYEM KCKAVDSLNK PSPPKKNKWP VPPVRPQGDK 1080 YICIDYINVM RVVVATKARV SLIEVAELAA AKWVVSTCKS AKQDATKRAI QFLRVCYNVD 1140 IIDLNYGKGV YAGIKCALSR ENNIFPTPAL PPAAPRKPKA SSSFGEHAV*

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence

MEAGMGGITD VYSSAVLPVS DPKAVGKKTL EWDLNDWKWD GDLFLATPLN TTHTPLDCRS  60
KQLFPLGPEL AMNNNVGSEE ISITNEKGKR EMEKRRRVVV VPHEELNEEG RPLNLKLGEQ  120
VYPIAEDEAD KLEGKSVKKS RSAGTGTSQP ACQVEGCMAN LSNAKDYHRR HKVCEVHSKV  180
SEAFVRNVMQ RFCQQCSRFH ALPEFDEGKR SCRRRLAGHN KRRRKTLPET SPNVGSLTDE  240
KSAGYLLVSL LRILSNLHSN GSDETKDQDL ISHLLRNLAS QVSGSNLPEL QQGSQRLLNA  300
GISVGIPEKN PSSAQELCQA VPSAEAHIGL LTRENQHQKE KTQYASQPGI FHPADGSIAT  360
KGSVPRAYLG IDLNNVYDDS QECVDIPGNG HGSIACAYWP EHLQKSSPPQ TSGISDSNSG  420
HSSSSGSDSQ GRTDRIVFKL FGKDPDDLPH QLRTQILDWL SHKPSDIEGY IRPGCIVLTI  480
YLRLNKSLWE ELCYDMSSSL SRLLSLSDDP FWKTGWIYTR VQQSAAFICD GRVVLDTPLP  540
FKSRGSQISS ISPIAVPAAQ TVQLVVKGSN LSGPTSRLLC AIEGRYLVQD SCYSLVESTA  600
EQDEVQSLSF HCSIPNVVGR GFIEVEDYGL SGCFFPFIVA EPEICSEICM LERVMETVGT  660
DEGINRRNDA LEFIHEMGWL LHADRLSSMS GQPNIQLDLF PFVRLKWLID FSMDHDWSAV  720
LRKLLDLLFS GIVDTGNHAS VKNALSEMPL LHTAVQRNSR SMVEFLLRYI PKKVKNTKGS  780
EQKQSHYEPP ISFLFRPDVT GSNGLTPLHL AASCAGFENI LDALLEDPGM VGIGAWENAR  840
DSTGLTPKDY AYLRGHNHYI VLFQSKVNKI SSGKHVVVDI LGLSNLNSKQ KQSDELKSAK  900
FNSLYTEKRQ ISQNCKLCVQ RPNYGFRGTS LTCRPVVMSL VTIAVVCVCT ALLFKKKRSD  960
EAEKLAVIVD VLVQNRFELI EEINTSFVLG VGWDLIMEMQ KLEKTSNEPR IVESYHFVSV  1020
LAESEYGLQI HDLSSEIMYR LDLYAFLYEM KCKAVDSLNK PSPPKKNKWP VPPVRPQGDK  1080
YICIDYINVM RVVVATKARV SLIEVAELAA AKWVVSTCKS AKQDATKRAI QFLRVCYNVD  1140
IIDLNYGKGV YAGIKCALSR ENNIFPTPAL PPAAPRKPKA SSSFGEHAV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	98	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein