PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029416-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 348aa MW: 38017.4 Da PI: 8.4926

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029416-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	98	175	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dl++++eyhrrhkvCe hsk+pvvlv g+eqrfCqqCsrfh+l++fDe krsCr+rL++hn+rrrk+q+ AUR62029416-RA 98 ICSVDGCASDLNQCREYHRRHKVCERHSKTPVVLVGGKEQRFCQQCSRFHSLEKFDEVKRSCRKRLDGHNRRRRKRQP 175 5**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MEWDSKSCAW NGVSKVEFQD NGYHHHLATL AGSSGTGINN MFSVDLKLGR LGDMGDVSMD 60 TLKNSMPLNM ASSSSPSPVL ALSKRGRPGN SGAQSTVICS VDGCASDLNQ CREYHRRHKV 120 CERHSKTPVV LVGGKEQRFC QQCSRFHSLE KFDEVKRSCR KRLDGHNRRR RKRQPETFNM 180 PDSAGGVLSS QTADGMLQYS CPQMHTVNWP TMSQPDLYFQ NNQETIYQPL LNDVAPTGSR 240 RGGLRVSPDN SGCALSLLSR YSSQSSDIRV GPVMQPTVMS SATAQGSSTS LHLNNSYQLP 300 CSQGLDDIES SASLSSSSNT NAPNIGGFHT GHAGFRENTR IFPFGWE*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MEWDSKSCAW NGVSKVEFQD NGYHHHLATL AGSSGTGINN MFSVDLKLGR LGDMGDVSMD  60
TLKNSMPLNM ASSSSPSPVL ALSKRGRPGN SGAQSTVICS VDGCASDLNQ CREYHRRHKV  120
CERHSKTPVV LVGGKEQRFC QQCSRFHSLE KFDEVKRSCR KRLDGHNRRR RKRQPETFNM  180
PDSAGGVLSS QTADGMLQYS CPQMHTVNWP TMSQPDLYFQ NNQETIYQPL LNDVAPTGSR  240
RGGLRVSPDN SGCALSLLSR YSSQSSDIRV GPVMQPTVMS SATAQGSSTS LHLNNSYQLP  300
CSQGLDDIES SASLSSSSNT NAPNIGGFHT GHAGFRENTR IFPFGWE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-42	SBP family protein