PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028905-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 318aa MW: 34782.1 Da PI: 8.984

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028905-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.5	3.4e-42	94	170	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v++ g eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ AUR62028905-RA 94 CLVDGCKADLSKCRDYHRRHKVCEMHSKTPRVTIGGNEQRFCQQCSRFHSLGEFDEGKRSCRKRLEGHNRRRRKPQP 170 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MGYKLTKNYC DLAELKKGGI ATISAIFGSS SFDTEKAIGE RLVDLKLGRL GDIGKGLVNN 60 FKGHSHSIMD PFSPTAGSSK RPRTPGTSTQ VVSCLVDGCK ADLSKCRDYH RRHKVCEMHS 120 KTPRVTIGGN EQRFCQQCSR FHSLGEFDEG KRSCRKRLEG HNRRRRKPQP EPLPVNHGNF 180 FSASQEKQAQ AELSLPDPQL PLIVELKPFL NQVIDSDRAL SLLSSNAETP EMGLGRTFHH 240 PSPINPTRPM LSSLHFNSVP SQYSGSSQGH GMEGHPTGSG LFSDLRSSNS LCQDVFQNDT 300 GASSTSGGHQ TLSFSWE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	168	KRSCRKRLEGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-44	SBP family protein