PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62028204-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 338aa    MW: 37234.2 Da    PI: 7.2704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62028204-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.2e-1090114126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ G C+y  +C+FaHg
  AUR62028204-RA  90 YKTKLCCKFRA-GVCPYVTNCNFAHG 114
                     9**********.*************9 PP

2zf-CCCH17.57.6e-06164189126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yG++C+F H+
  AUR62028204-RA 164 YKGRHCKKFYTEEGCPYGENCTFLHD 189
                     78888********************7 PP

3zf-CCCH43.36.1e-14222247126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG C++G++C+FaHg
  AUR62028204-RA 222 WKTRICNKWETTGSCPFGSKCHFAHG 247
                     8************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDFGTEPGFS EMGGSFENWG GINPNDQAIW ATEDEYRSWN GSETPSSNYH LPPPLRSGAG  60
AEPPNKKTRS SQSGDSAASS RSKAIGKMFY KTKLCCKFRA GVCPYVTNCN FAHGLEELRK  120
PPPNWQEIVA AHEEERGVTV EQREEHQIPT ISTTELRNES PRTYKGRHCK KFYTEEGCPY  180
GENCTFLHDE QSRARESVAI SVSPTVGGAF GANGPTQKPS NWKTRICNKW ETTGSCPFGS  240
KCHFAHGLAE LHKFTGTEGE GRDSSVLTET RPSGMTTKTD ASPSLSTPRQ EYHHVGLGIP  300
SQRTSSIPQA VGQRPAQKWK GPDKISRIYG DWIDDIE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-104C3H family protein