PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62028204-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 37234.2 Da PI: 7.2704 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.2e-10 | 90 | 114 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ G C+y +C+FaHg AUR62028204-RA 90 YKTKLCCKFRA-GVCPYVTNCNFAHG 114 9**********.*************9 PP | |||||||
2 | zf-CCCH | 17.5 | 7.6e-06 | 164 | 189 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ AUR62028204-RA 164 YKGRHCKKFYTEEGCPYGENCTFLHD 189 78888********************7 PP | |||||||
3 | zf-CCCH | 43.3 | 6.1e-14 | 222 | 247 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG C++G++C+FaHg AUR62028204-RA 222 WKTRICNKWETTGSCPFGSKCHFAHG 247 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MDFGTEPGFS EMGGSFENWG GINPNDQAIW ATEDEYRSWN GSETPSSNYH LPPPLRSGAG 60 AEPPNKKTRS SQSGDSAASS RSKAIGKMFY KTKLCCKFRA GVCPYVTNCN FAHGLEELRK 120 PPPNWQEIVA AHEEERGVTV EQREEHQIPT ISTTELRNES PRTYKGRHCK KFYTEEGCPY 180 GENCTFLHDE QSRARESVAI SVSPTVGGAF GANGPTQKPS NWKTRICNKW ETTGSCPFGS 240 KCHFAHGLAE LHKFTGTEGE GRDSSVLTET RPSGMTTKTD ASPSLSTPRQ EYHHVGLGIP 300 SQRTSSIPQA VGQRPAQKWK GPDKISRIYG DWIDDIE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-104 | C3H family protein |