PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027959-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 387aa    MW: 40489.6 Da    PI: 7.2435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027959-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-11426225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k e+Cr+f+r G C++Gd+CkF+H
  AUR62027959-RA  4 KKEPCRNFLR-GSCRFGDKCKFSH 26
                    78********.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MPIKKEPCRN FLRGSCRFGD KCKFSHATQQ QPKSNAFGFG SQTATPFQQQ KPNPFGFGVQ  60
NSGSSGGFGQ PNSNKPFENK WVRSEQPQNQ SQAASHKCTD PDSCKRQIAE DFQNESPLWK  120
LTCYGHFKYF PCDITGDISY EELRAVAYDD AKRGTSLQSI VSLLPSLLNE ALICSLPSTP  180
SNSAFGQSQG PGPFGGNSAP SGPFGTQVSA QPGGILPAAN KSGFGNSGMS SQGIFGTQVP  240
AQPGGSFAAN TSGFFGNSAM RGQEAGGNTF TPPAVGFGNI GMNNQGPQVP VQTGGAPITS  300
NAGGFGNSGI NSQGSQLPST SSVSLDIQTP AVNNSTTTFN GFVGANGVQQ TIDNNPLEIS  360
AVDASIWLKQ EWKLGERPDI LGYSEI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-57C3H family protein