PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027480-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 788aa MW: 86237.1 Da PI: 7.2442

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027480-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	597	639	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N+++ +Lr ++P+ + K++Ka+i + A++YIk+L AUR62027480-RA 597 VSERNRRKKLNERLYNLRAVVPNiS------KMDKASIIKDAINYIKEL 639 57*******************66......**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence
GWASTSSVTF KLDNSKKLPL VSCKASIDAP NSSIQSENRA LVVQGVSEKI VGVLGGGQLG 60 RMLCQAASEM AIKVAILDPS ENCPASSFSH YHMVGSFDDS TTVEEFAKRC GVLTMEIEHV 120 DVATLDKLEQ QGVDCQPKAS TIRIIQDKYL QKLHFSRHGI PLPEFMEIDN DESARSAGKL 180 FGYPLMIKSK RLAYDGRGNA VAKCEEDLTS AVSALGGYER GLYVEKWAPF IKELAVIVAR 240 GRDNSVLCYP VVETIHKENI CHIVKAPAAV PWKVRKLATD VAHKAVSSLE GAGVFAVELF 300 LTEAGEILLN EVAPRPHNSG HHTIESCYTS QYEQHLRAVI GLPLGDPSMK TPAAIMYNIL 360 GEDEGEPGFR IAHELMTRAL ALPGASVHWY DKSAMKRQRK MGHITIVGSS MGIVEGHLKS 420 LLKEDNPDDA VSARVGIIMG SDSDLPVMKD ASRILNMFGV AHEVRIVSAH RTPDMMFSYA 480 TSAWERGIQV IIAGAGGAAH LPALTPVPVI GVPVRGSSLD GMDSLLSIVQ MPRGVPVATV 540 AINNATNAGL LAVRMLGVAD SDLTSSLGLD ETLSSYYDYD SSSPDGCASS MASKNIVSER 600 NRRKKLNERL YNLRAVVPNI SKMDKASIIK DAINYIKELH EQERRIKSDI SDLEYRRSKN 660 GIDNTCSMMD YEQELPGLLI KSKKKRTDHR KQHYDFNGCC RTSINDLEVR VSYVGERTIV 720 VSLTCSKREG TMVKLCEMFE SLKLKIITAH ITAFAGRLLK TVFLEADELE KDHLRIKIET 780 VISSTHV*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence

GWASTSSVTF KLDNSKKLPL VSCKASIDAP NSSIQSENRA LVVQGVSEKI VGVLGGGQLG  60
RMLCQAASEM AIKVAILDPS ENCPASSFSH YHMVGSFDDS TTVEEFAKRC GVLTMEIEHV  120
DVATLDKLEQ QGVDCQPKAS TIRIIQDKYL QKLHFSRHGI PLPEFMEIDN DESARSAGKL  180
FGYPLMIKSK RLAYDGRGNA VAKCEEDLTS AVSALGGYER GLYVEKWAPF IKELAVIVAR  240
GRDNSVLCYP VVETIHKENI CHIVKAPAAV PWKVRKLATD VAHKAVSSLE GAGVFAVELF  300
LTEAGEILLN EVAPRPHNSG HHTIESCYTS QYEQHLRAVI GLPLGDPSMK TPAAIMYNIL  360
GEDEGEPGFR IAHELMTRAL ALPGASVHWY DKSAMKRQRK MGHITIVGSS MGIVEGHLKS  420
LLKEDNPDDA VSARVGIIMG SDSDLPVMKD ASRILNMFGV AHEVRIVSAH RTPDMMFSYA  480
TSAWERGIQV IIAGAGGAAH LPALTPVPVI GVPVRGSSLD GMDSLLSIVQ MPRGVPVATV  540
AINNATNAGL LAVRMLGVAD SDLTSSLGLD ETLSSYYDYD SSSPDGCASS MASKNIVSER  600
NRRKKLNERL YNLRAVVPNI SKMDKASIIK DAINYIKELH EQERRIKSDI SDLEYRRSKN  660
GIDNTCSMMD YEQELPGLLI KSKKKRTDHR KQHYDFNGCC RTSINDLEVR VSYVGERTIV  720
VSLTCSKREG TMVKLCEMFE SLKLKIITAH ITAFAGRLLK TVFLEADELE KDHLRIKIET  780
VISSTHV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	1e-56	bHLH family protein