PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62026900-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47935 Da PI: 6.9141 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.2e-11 | 72 | 96 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ t +Ck+Gd+CkF H+ AUR62026900-RA 72 GEKDCSHYMLTRICKFGDNCKFDHP 96 7889********************8 PP | |||||||
2 | zf-CCCH | 26.4 | 1.2e-08 | 112 | 138 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G CkF+H++ AUR62026900-RA 112 PGEPDCPYFLKTQKCKFGQMCKFNHPK 138 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 159 | 183 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG Ck+G +CkF+H++ AUR62026900-RA 159 EPVCSFYMKTGKCKFGTSCKFHHPK 183 789********************96 PP | |||||||
4 | zf-CCCH | 38.8 | 1.6e-12 | 238 | 262 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++tG CkyG +C+++H+ AUR62026900-RA 238 DEVNCPFYMKTGSCKYGITCRYNHP 262 6789********************9 PP | |||||||
5 | zf-CCCH | 40.3 | 5.4e-13 | 326 | 349 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++C+F+H+ AUR62026900-RA 326 QIECDFYMKTGECKFGEKCRFHHP 349 568********************9 PP | |||||||
6 | zf-CCCH | 40.3 | 5.2e-13 | 378 | 402 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C+f+++tGtC+yG++CkF H+p AUR62026900-RA 378 VEHCPFYMKTGTCSYGANCKFDHPP 402 567********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MYVPAAAATS LWPSFDASST LSKRPSEALY DHPVLGAHMI GQNEAWFASD SLAKRPRLES 60 ASNLPIYPQR PGEKDCSHYM LTRICKFGDN CKFDHPIWSA SVPSSDSHPE RPGEPDCPYF 120 LKTQKCKFGQ MCKFNHPKDK LDSSSCKTDD PDLPDRPSEP VCSFYMKTGK CKFGTSCKFH 180 HPKDIKVQSD KQEAGDGVQT HSIDQHGSDG TAGDGNIIKP TSNAALSYNS KGLPMRPDEV 240 NCPFYMKTGS CKYGITCRYN HPDRNELLSP YSVINPTAAM VGHTVFPSLA NFNVGLVNPA 300 ASIFQSLQPR LAQTMVPMMY PQRPGQIECD FYMKTGECKF GEKCRFHHPV DRSAPTRNQT 360 LEQNVKFTLA GLPRREGVEH CPFYMKTGTC SYGANCKFDH PPPGEVMAVA GQETSTKAEE 420 EETEDGENVA TAE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-163 | C3H family protein |