PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026900-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 434aa MW: 47935 Da PI: 6.9141

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026900-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	72	96	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ t +Ck+Gd+CkF H+ AUR62026900-RA 72 GEKDCSHYMLTRICKFGDNCKFDHP 96 7889********************8 PP
2	zf-CCCH	26.4	1.2e-08	112	138	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G CkF+H++ AUR62026900-RA 112 PGEPDCPYFLKTQKCKFGQMCKFNHPK 138 5789*********************96 PP
3	zf-CCCH	39.3	1.1e-12	159	183	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG Ck+G +CkF+H++ AUR62026900-RA 159 EPVCSFYMKTGKCKFGTSCKFHHPK 183 789********************96 PP
4	zf-CCCH	38.8	1.6e-12	238	262	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++tG CkyG +C+++H+ AUR62026900-RA 238 DEVNCPFYMKTGSCKYGITCRYNHP 262 6789********************9 PP
5	zf-CCCH	40.3	5.4e-13	326	349	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++C+F+H+ AUR62026900-RA 326 QIECDFYMKTGECKFGEKCRFHHP 349 568********************9 PP
6	zf-CCCH	40.3	5.2e-13	378	402	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C+f+++tGtC+yG++CkF H+p AUR62026900-RA 378 VEHCPFYMKTGTCSYGANCKFDHPP 402 567********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MYVPAAAATS LWPSFDASST LSKRPSEALY DHPVLGAHMI GQNEAWFASD SLAKRPRLES 60 ASNLPIYPQR PGEKDCSHYM LTRICKFGDN CKFDHPIWSA SVPSSDSHPE RPGEPDCPYF 120 LKTQKCKFGQ MCKFNHPKDK LDSSSCKTDD PDLPDRPSEP VCSFYMKTGK CKFGTSCKFH 180 HPKDIKVQSD KQEAGDGVQT HSIDQHGSDG TAGDGNIIKP TSNAALSYNS KGLPMRPDEV 240 NCPFYMKTGS CKYGITCRYN HPDRNELLSP YSVINPTAAM VGHTVFPSLA NFNVGLVNPA 300 ASIFQSLQPR LAQTMVPMMY PQRPGQIECD FYMKTGECKF GEKCRFHHPV DRSAPTRNQT 360 LEQNVKFTLA GLPRREGVEH CPFYMKTGTC SYGANCKFDH PPPGEVMAVA GQETSTKAEE 420 EETEDGENVA TAE*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MYVPAAAATS LWPSFDASST LSKRPSEALY DHPVLGAHMI GQNEAWFASD SLAKRPRLES  60
ASNLPIYPQR PGEKDCSHYM LTRICKFGDN CKFDHPIWSA SVPSSDSHPE RPGEPDCPYF  120
LKTQKCKFGQ MCKFNHPKDK LDSSSCKTDD PDLPDRPSEP VCSFYMKTGK CKFGTSCKFH  180
HPKDIKVQSD KQEAGDGVQT HSIDQHGSDG TAGDGNIIKP TSNAALSYNS KGLPMRPDEV  240
NCPFYMKTGS CKYGITCRYN HPDRNELLSP YSVINPTAAM VGHTVFPSLA NFNVGLVNPA  300
ASIFQSLQPR LAQTMVPMMY PQRPGQIECD FYMKTGECKF GEKCRFHHPV DRSAPTRNQT  360
LEQNVKFTLA GLPRREGVEH CPFYMKTGTC SYGANCKFDH PPPGEVMAVA GQETSTKAEE  420
EETEDGENVA TAE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-163	C3H family protein