PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026866-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 436aa MW: 48984.2 Da PI: 9.897

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026866-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.7	2.3e-14	368	434	5	72
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 +++s++ k+g ++lpk+f+ +g+ + ++ d +g+sW+vkl+y+++sg+ +++kGWk+F an AUR62026866-RA 368 TLTSYSIKKGVVYLPKSFVVLNGLRRMCC-NARVIDGKGKSWQVKLNYWNSSGQAYISKGWKQFQAAN 434 579*****************9998775.9*******************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MGSITLFELR LFHSIDRVLF SKLVTALKIQ ASQALLIMAL LFWLEDANHC KIISKLADLS 60 DNLLDAVINE VVLCINCLKT KTPTTHGGSL HLLSRMMDKE ISLKIICDMK YTAISCVKDY 120 LNDVCAWIFT DILMQVLQKS SNLTLNRPFF VPGFPHPTFG PLEISIVPLN AIVPSKGIWG 180 WKLEFEAPIE DRTLFLTFSR GFPVSQEEVM QFFTQMCGNC IENFQMEVVN NHSSKVQSLY 240 ARMGLRSVAY VDQIMRGKHL AMFRSKVISI VILKQPKDGV AGLSVFDGGA DDKGSASPSL 300 DCRNRRRSPL VRCLFTIDTI GSRKDTSKMN FRSTTLSTRK RKRQDSETEN ATSPVLNRQC 360 QSPSCRITLT SYSIKKGVVY LPKSFVVLNG LRRMCCNARV IDGKGKSWQV KLNYWNSSGQ 420 AYISKGWKQF QAANS*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MGSITLFELR LFHSIDRVLF SKLVTALKIQ ASQALLIMAL LFWLEDANHC KIISKLADLS  60
DNLLDAVINE VVLCINCLKT KTPTTHGGSL HLLSRMMDKE ISLKIICDMK YTAISCVKDY  120
LNDVCAWIFT DILMQVLQKS SNLTLNRPFF VPGFPHPTFG PLEISIVPLN AIVPSKGIWG  180
WKLEFEAPIE DRTLFLTFSR GFPVSQEEVM QFFTQMCGNC IENFQMEVVN NHSSKVQSLY  240
ARMGLRSVAY VDQIMRGKHL AMFRSKVISI VILKQPKDGV AGLSVFDGGA DDKGSASPSL  300
DCRNRRRSPL VRCLFTIDTI GSRKDTSKMN FRSTTLSTRK RKRQDSETEN ATSPVLNRQC  360
QSPSCRITLT SYSIKKGVVY LPKSFVVLNG LRRMCCNARV IDGKGKSWQV KLNYWNSSGQ  420
AYISKGWKQF QAANS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	9e-11	B3 family protein