PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62026247-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25821.4 Da    PI: 7.6414
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62026247-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ri+n++ rqvtfskRr+g+lKK +EL +LCdaev viifsst klyeyss
  AUR62026247-RA  9 ERIDNSTSRQVTFSKRRKGLLKKSKELAILCDAEVGVIIFSSTSKLYEYSS 59
                    69***********************************************96 PP
2K-box39.91.8e-1476160998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++ ++es  +e++  +++++ L ++ R+l+G++L+ L+++eLq+Le+qLe sl+      +++l++ i+el +k + +q+en++L +k+
  AUR62026247-RA  76 QHHMNSESELKEAEITRQQLQDLHESYRQLMGQKLSCLNIEELQSLEEQLEMSLR-----GEQILTNDIRELNHKGNIIQQENMELCEKV 160
                     56778889999999***************************************95.....59************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MGRGKIVIER IDNSTSRQVT FSKRRKGLLK KSKELAILCD AEVGVIIFSS TSKLYEYSSS  60
SMKSVIERYN KAKHVQHHMN SESELKEAEI TRQQLQDLHE SYRQLMGQKL SCLNIEELQS  120
LEEQLEMSLR GEQILTNDIR ELNHKGNIIQ QENMELCEKV NLMRQENTEM CKKLYSVGNA  180
TEVSSNSLMP NGLTTRGDPH ELIHLRLSHP ERHRNQAIGE TTVLG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-47MIKC_MADS family protein