PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62026048-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family AP2
Protein Properties Length: 418aa    MW: 45678.1 Da    PI: 9.7416
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62026048-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1374130155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  AUR62026048-RA  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 130
                     57*******************6666777775555599******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MASTSSGDVG RVGVATVNMT SGTTAASAAI NKNKESSESV GVVLMKKVKR ERGGSTAKDR  60
ISKMPPSTAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYSRDLDEMQ NVSREEYLAS LRRKSSGFSR GIAKYRALSS  180
GRWEPSLGCA TATEYHHGIH YGKGEDMPAE GDYPGGFPIE RKLDLTGYIK WWGQRKIRQS  240
DSGKHSSAEE MGTELKSLER DIQSTEPYQM PQLGTSYEAK RNNKGSATSA LSILSRSAAY  300
KNMQEKASKA KETTNDSDEK ENKSYVSKID CGKAVQKMSD DSGIERLGST LGIGGSSLHK  360
NMFPLSPLLT APLLTNYNAV DPLADPILWT SLMPLLPTAP SRTAEFTAAY NAAQQHG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-120AP2 family protein