PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026005-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 673aa MW: 73756.4 Da PI: 6.4096

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026005-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg AUR62026005-RA 280 PCPDFRK-GACRRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MNNLTVETVD AFSSLLEVSA NNDVEAFKRL IEEDPSGIDE PGLWYVRKKG SKQMVYEHRT 60 PLMVASIYGS MDVLKLILSL SITDVNRSCG EDKSTALHCA ASGGSMNAVD AVRLLLEAGA 120 DHNALDANGH RPFDVIMVSP RQNDVKIALE ELLAGHGSIS ERILRLSSTT SNSNSPPLSS 180 SPVNGSPSSY SDSPPSPINS KFDDIQATSY TSEKKEYPID PSIPDIKNSI YATDEFRMYS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGP SCARRVCFFA HIPEELRPLY VSTGSAVPSP RSSASSSMDF 360 AAAMNFMPGS PSSLMSPSAF TPPMSPSAAN GISHSSLAWP QPNVPSLRLP GSNLQSSRLR 420 SSLNARDIAA EEFEMLQDYD LQQQLLSEFS CLSMNPNSLN RSNRSKTLNP SNLDDLFSAE 480 SLSPRYNDPG LGSCLYSPTH KSAVFNQFQQ QQQGMLSPIN TNFSPKGVAD HPLLSGRMSP 540 RSVEPISPMS ARASMLAQRE QQLHQFRSLS SRDLGTSLGA IVGSPVHSWS RWGSSNGKPD 600 WGTNTDELGK LRRSSSFELG NNGEEPDLSW VQSLVKESPT DIKEKVGGSV SSVVDSSYSN 660 AQAEVVDMAE RY*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MNNLTVETVD AFSSLLEVSA NNDVEAFKRL IEEDPSGIDE PGLWYVRKKG SKQMVYEHRT  60
PLMVASIYGS MDVLKLILSL SITDVNRSCG EDKSTALHCA ASGGSMNAVD AVRLLLEAGA  120
DHNALDANGH RPFDVIMVSP RQNDVKIALE ELLAGHGSIS ERILRLSSTT SNSNSPPLSS  180
SPVNGSPSSY SDSPPSPINS KFDDIQATSY TSEKKEYPID PSIPDIKNSI YATDEFRMYS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGP SCARRVCFFA HIPEELRPLY VSTGSAVPSP RSSASSSMDF  360
AAAMNFMPGS PSSLMSPSAF TPPMSPSAAN GISHSSLAWP QPNVPSLRLP GSNLQSSRLR  420
SSLNARDIAA EEFEMLQDYD LQQQLLSEFS CLSMNPNSLN RSNRSKTLNP SNLDDLFSAE  480
SLSPRYNDPG LGSCLYSPTH KSAVFNQFQQ QQQGMLSPIN TNFSPKGVAD HPLLSGRMSP  540
RSVEPISPMS ARASMLAQRE QQLHQFRSLS SRDLGTSLGA IVGSPVHSWS RWGSSNGKPD  600
WGTNTDELGK LRRSSSFELG NNGEEPDLSW VQSLVKESPT DIKEKVGGSV SSVVDSSYSN  660
AQAEVVDMAE RY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein