PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025062-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 526aa MW: 59321.1 Da PI: 7.093

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025062-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.8e-06	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + + G C + d+C+FaHg AUR62025062-RA 7 FKTKLCVLYEK-GRCGR-DTCTFAHG 30 69***9999.*.*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MVETRPFKTK LCVLYEKGRC GRDTCTFAHG DSDLRRFSGY SAYPKGPDLI ESGYGSNLKF 60 AFLRYGHPSV LYITSLMHYM FASFKAVCTN SGLLVRLALQ QFITLIFKRE IKLAKSSVLH 120 SESSTFAIPD RPINRDNDLR SKLDRKRSPL HKSSPRRDAN GSRAYKRFSP SQPSKRRKLR 180 THEHEDGRNK YSGGFKCQNG SAESEKDKLH ILSNSRNVVE DELTQLEYEV DVLFNQKSQM 240 EIAFQERVQE ADNLSSRIRD LEAQLCDEKE KSKRVNSKIK KLIRAHVHHS RMQDELKRQV 300 YIAMSQIQLE QLVGELGTDA IPIVSVSENL DVNVISNEEF LELKDSASPA KKQAYVGKGW 360 KGGQEKLGIG YKGSLVADWL IEHLDTLFSL ASTTARGHGA RVLGSRRNPL VSFGGHQEAE 420 AGLSEENPQL QNIASKHFDP YDKVKESNFM VPPTSMAAHA VDFIELMEAE ENPEMLGTPK 480 CVENSLPFLL PPLPTVSQNN YIQYEGDDEN VDVDGLEELE EVYIV*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MVETRPFKTK LCVLYEKGRC GRDTCTFAHG DSDLRRFSGY SAYPKGPDLI ESGYGSNLKF  60
AFLRYGHPSV LYITSLMHYM FASFKAVCTN SGLLVRLALQ QFITLIFKRE IKLAKSSVLH  120
SESSTFAIPD RPINRDNDLR SKLDRKRSPL HKSSPRRDAN GSRAYKRFSP SQPSKRRKLR  180
THEHEDGRNK YSGGFKCQNG SAESEKDKLH ILSNSRNVVE DELTQLEYEV DVLFNQKSQM  240
EIAFQERVQE ADNLSSRIRD LEAQLCDEKE KSKRVNSKIK KLIRAHVHHS RMQDELKRQV  300
YIAMSQIQLE QLVGELGTDA IPIVSVSENL DVNVISNEEF LELKDSASPA KKQAYVGKGW  360
KGGQEKLGIG YKGSLVADWL IEHLDTLFSL ASTTARGHGA RVLGSRRNPL VSFGGHQEAE  420
AGLSEENPQL QNIASKHFDP YDKVKESNFM VPPTSMAAHA VDFIELMEAE ENPEMLGTPK  480
CVENSLPFLL PPLPTVSQNN YIQYEGDDEN VDVDGLEELE EVYIV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-21	C3H family protein