PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62024992-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 787aa MW: 86353.4 Da PI: 5.3618 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 29 | 54 | 2 | 26 |
-S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHg 26 kt+lC++f+ + C++G+ C+FaH AUR62024992-RA 29 KTSLCSYFRSNSgSCSHGEECRFAHN 54 89****9975556************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence |
MRKREEEDVE SESDDLKKPK PASLHPLHKT SLCSYFRSNS GSCSHGEECR FAHNEEELRP 60 RPDGSWDPTS LRVKRKESEE KRDAEDDEGD VEEERSAMMT EVLGDSGDPQ LSKCLIHLPR 120 KWTSDQLKTY LDEQGVVFKL AKKKKGMSVG FLTFEAAEQV KSATELLGGK SIGKEKLKIG 180 DVIPRSYDEK IKSAQKRYQS GMPGVADETE ATLASNGTED GEGNSSTSRV KSVRDAVTPL 240 AHLSYAEQLE QKKNSLTQML KKLTRNARKA CPKDLQLPEW VVKSREIGGL PCKLEGIIES 300 PLINGYRNKC EFSVGLSVQG KPTVGFMLGN FREGVTAVEE PTNCLNVSKI ACNYASVFQE 360 FLRDSALPIW NRFNNSGFWR QLTVREGRNP QKNVELEIEN HEANITEVML IVQVSTEGCD 420 DDLVNSELEK LTQAFVNGAA STSPPLPLTV LALQDHKGIS NVAPADAPLR PLPIHTAQSG 480 SETEVIMATN ESRIHDYIGN LRFSISPTAF FQVNTLAAEK LYSLAGDWAG LGPDTLLFDV 540 CCGTGTIGLT LANRVGMVVG IEMNASAVSD AQRNAEINAI TNCKFICAKA EDVMGSLLRE 600 YLDDTSNPLD GDEKENGAAE SQSVSLNEAD PEDCSNEVNV DTNHACGSDK GEQDLQSNLK 660 DSNTKDGSAL KQHFKNVVAI VDPPRSGLHP VVLKALRTHP CLKRLVYISC NPETLVANAI 720 ELCTPSSEIA EKGRKGQGWR NMSNAGLARH RLKSMPKSEP FQPVKAMAVD LFPHTPHCEL 780 VMLLER* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |