PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62024930-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 224aa MW: 24653 Da PI: 7.072

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62024930-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.9	2.4e-45	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la AUR62024930-RA 13 PCAACKLLRRRCAPDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQELPFHQRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQTQLA 107 7********************************************************************************************** PP DUF260 96 llke 99 ++++ AUR62024930-RA 108 VAQA 111 9987 PP
2	DUF260	57.5	4e-18	111	165	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++e AUR62024930-RA 111 AEELPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAE 165 57899*********************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MKENGRKQGA VSPCAACKLL RRRCAPDCVF APYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPFHQRGDAV SSMVYEANAR IRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEELPMHQRG 120 DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDVLQAQLA LAQAEVVHMR MRQYSDKPRV 180 DHHQGTSSPE NSPSSKIVSS QAKSLFMDMV VDQPNMEESL WSC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-67	LBD family protein