PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62024738-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 237aa    MW: 25937.6 Da    PI: 6.5723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62024738-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-397106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a l
  AUR62024738-RA   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPASDRSEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQARL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allke 99 
                     a+lk+
  AUR62024738-RA 102 AALKQ 106
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MTGSSSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPASD  60
RSEAAITISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAR LAALKQLQAA QGLLNGNNSN  120
QNPSERSSSN YPQDVHSWLQ SEYPQMVPPF DPNHLNCSAE SSTIYGSNNN QGGYNNNHNS  180
MVLQDDQDAS FASYEGSSSH HSASMASLEY ENKSKWPYQD ADDLHSMAFG YTQYSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.13e-58LBD family protein