PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62024537-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GRF

Protein Properties

Length: 542aa MW: 58329.8 Da PI: 9.3084

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62024537-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1e-24	175	218	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e AUR62024537-RA 175 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVE 218 79***************************************998 PP
2	QLQ	60.6	4.4e-21	106	141	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKy++an+P+Pp+Ll +i++ AUR62024537-RA 106 PFTPSQWFELEQQALIYKYIIANVPIPPNLLIPIRR 141 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MEFGLMGSNG LSDSGNVLVG STDFSNKEMP SSGTSDDNWK PTKIAKLSNA FSDWQQEQNL 60 LSFCSSKSST FPFFQHPNSF YSKSAGYSCN GSLNANMCLS NGVRAPFTPS QWFELEQQAL 120 IYKYIIANVP IPPNLLIPIR RAFESAGFSS FSSGLLRPNT FGWGPFHLGF ANSADPEPGR 180 CRRTDGKKWR CSRDAVPDQK YCERHMNRGR HRSRKPVEGH PGHSISGVTT NKTSSSTTNV 240 MNSASSLSAL VVPGGGTSNS FAVNLNQSKD IQPVPPNHLP FSLVNRHIVN KANSGQGMQG 300 ATGLDFQYPK ISLNSNGNTF SVPESTASDF AFLTSDAILK TTQRDSSVSR SYGPTHDLNA 360 QRSNPQRSNH SFMDDQSSIL WSKLQTQTDR TTQLSISIPP ADFMSSTSSP TGEKVALSPL 420 RLSREVDTVQ MGLGVNTITN ERRPSSWETS LDGPLGEVLK TTTNSSSGVQ SKSILPLNLI 480 SKGYDGNPQS ASSPTGVLGY FFNRSAGSSP KSESGKALET STLSGDLIGF TLGSSSSLPI 540 F*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MEFGLMGSNG LSDSGNVLVG STDFSNKEMP SSGTSDDNWK PTKIAKLSNA FSDWQQEQNL  60
LSFCSSKSST FPFFQHPNSF YSKSAGYSCN GSLNANMCLS NGVRAPFTPS QWFELEQQAL  120
IYKYIIANVP IPPNLLIPIR RAFESAGFSS FSSGLLRPNT FGWGPFHLGF ANSADPEPGR  180
CRRTDGKKWR CSRDAVPDQK YCERHMNRGR HRSRKPVEGH PGHSISGVTT NKTSSSTTNV  240
MNSASSLSAL VVPGGGTSNS FAVNLNQSKD IQPVPPNHLP FSLVNRHIVN KANSGQGMQG  300
ATGLDFQYPK ISLNSNGNTF SVPESTASDF AFLTSDAILK TTQRDSSVSR SYGPTHDLNA  360
QRSNPQRSNH SFMDDQSSIL WSKLQTQTDR TTQLSISIPP ADFMSSTSSP TGEKVALSPL  420
RLSREVDTVQ MGLGVNTITN ERRPSSWETS LDGPLGEVLK TTTNSSSGVQ SKSILPLNLI  480
SKGYDGNPQS ASSPTGVLGY FFNRSAGSSP KSESGKALET STLSGDLIGF TLGSSSSLPI  540
F*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-69	GRF family protein