PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62024533-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family AP2
Protein Properties Length: 530aa    MW: 57862.4 Da    PI: 7.0965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62024533-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.6e-11212268155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ ++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  AUR62024533-RA 212 SQYRGVTKHRWTGRFEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARSYDLAALKYWG 268
                     78*******************77776664346655.77******************97 PP
2AP246.21.1e-14313362355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  AUR62024533-RA 313 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 362
                     9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    
MFLSPLPHQQ QLSSGPICFD HGGGGDNSGY FHSPLTVMPL KSDGSLCIME AFTRSQPPQE  60
RKLENFLGIS LDSIYRQQQH THQQQQQLES YISALSYQGF SEDDLLKNWE TVDHIDNSTN  120
TLASVAAAPT VGGGCGDLQS LSLSMSPGSQ SSCITAPATT TAATMTVANV SSGNDCVGVV  180
AMDTKKRGFG KMGQSKQTVH RKSIDTFGQR TSQYRGVTKH RWTGRFEAHL WDNSCKKEGQ  240
TRKGRQGGYD MEEKAARSYD LAALKYWGLS THTNFPIENY KQEIEEMKNM TRQEYVANLR  300
RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF  360
RGTNAVTNFD ISRYHVEKIM SSNTLLAGEQ ARRNKLELIK AFEESPSVTE NITAGDVTVA  420
SNGNDSPGEW KMVSIDPIPS FSLGLQDLVE LEMASPSQKL ASAAHFSSAS SLVTSLNSSR  480
EGSPDENMSS TTSNSMVFPW VASAGQLTPT AATAIPLAHF PVFAAWNDA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein