PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62024322-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 350aa MW: 37731.3 Da PI: 7.7716

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62024322-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.6	1.8e-43	48	123	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak+y++rhkvC +hsk+p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ AUR62024322-RA 48 RCQVEGCNTDLSDAKTYYSRHKVCGMHSKSPIVIVAGIEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 123 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGSNYMTVEG SSTVSSGLSD SINGLKFGQK IYFEDGGKAV LQSGQPPRCQ VEGCNTDLSD 60 AKTYYSRHKV CGMHSKSPIV IVAGIEQRFC QQCSRFHRLP EFDQGKRSCR RRLAGHNERR 120 RKPPPGSLLS SRLGRLSSSF FGDNTSKNGG FLLDFSSYSR QSEKDLWPGS ETSEQVSGSQ 180 SRSIMWPGHS EDHPSKMYLH GSASESSYSF PSGECITGVS SDSSCALSLL SNQSWGSRNS 240 SSGTALGNSM NVDGTPVSQC NAAHGVTVAH FPNSSSSWGY KGNNDASCGS DGVPSGHLGL 300 GQISQPHYNG QFHGVLLMDH VQDGGRQYMD VDHSRAYNSN NTNHVDWSL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGSNYMTVEG SSTVSSGLSD SINGLKFGQK IYFEDGGKAV LQSGQPPRCQ VEGCNTDLSD  60
AKTYYSRHKV CGMHSKSPIV IVAGIEQRFC QQCSRFHRLP EFDQGKRSCR RRLAGHNERR  120
RKPPPGSLLS SRLGRLSSSF FGDNTSKNGG FLLDFSSYSR QSEKDLWPGS ETSEQVSGSQ  180
SRSIMWPGHS EDHPSKMYLH GSASESSYSF PSGECITGVS SDSSCALSLL SNQSWGSRNS  240
SSGTALGNSM NVDGTPVSQC NAAHGVTVAH FPNSSSSWGY KGNNDASCGS DGVPSGHLGL  300
GQISQPHYNG QFHGVLLMDH VQDGGRQYMD VDHSRAYNSN NTNHVDWSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	7e-42	SBP family protein