PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023577-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 524aa MW: 58381.4 Da PI: 6.4232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023577-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.8e-07	279	300	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H AUR62023577-RA 279 FCTICGKGFKRDANLRMHMRGH 300 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MDVKDRPNSE NWTEPSTFGN EVQQNASLNN QPFTNFNSQE PSKWEDPSIL DYSMRIDSSF 60 SKFNQPSENS SLLVGNPSNQ GKIPNQNGAH MNQMPDGSNF DPRAMLNNLS FLEQKIHQLQ 120 ELVHMIVGRK AQVPGNQEEV VIQQQQQLIT ADLTSIIVQL ISAAGSLLPS MKHNLSAANS 180 SLLLNRTLFP SATTVGTGMI SQNNRGQVKQ AVGEVKPVEQ SNQVEVPANC VTEMNCNNME 240 EDHELKDDDD GKEEEHLPPG SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH 300 GDEYKTPAAL AKPNKESSSE KVLLKRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRTH 360 CDKSYICSRC HTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH IALFQGHTPA 420 IPSEEHKGTS VPSNISNNSE TTNNVANMGF SFCSNGANEN GAQIMMDGKG NVDDPFFSLL 480 NYEYSLGGLQ DFPLTNFDDS PSSFSFLNSE EKDGMMCVSN DVH*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MDVKDRPNSE NWTEPSTFGN EVQQNASLNN QPFTNFNSQE PSKWEDPSIL DYSMRIDSSF  60
SKFNQPSENS SLLVGNPSNQ GKIPNQNGAH MNQMPDGSNF DPRAMLNNLS FLEQKIHQLQ  120
ELVHMIVGRK AQVPGNQEEV VIQQQQQLIT ADLTSIIVQL ISAAGSLLPS MKHNLSAANS  180
SLLLNRTLFP SATTVGTGMI SQNNRGQVKQ AVGEVKPVEQ SNQVEVPANC VTEMNCNNME  240
EDHELKDDDD GKEEEHLPPG SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH  300
GDEYKTPAAL AKPNKESSSE KVLLKRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRTH  360
CDKSYICSRC HTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH IALFQGHTPA  420
IPSEEHKGTS VPSNISNNSE TTNNVANMGF SFCSNGANEN GAQIMMDGKG NVDDPFFSLL  480
NYEYSLGGLQ DFPLTNFDDS PSSFSFLNSE EKDGMMCVSN DVH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-158	C2H2 family protein